Stories that may be good( require further investigation) 18 stories
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First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

Chapters (15)
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Ponies are dangerous. At least, that's what everydragon says. They even stole his brother's egg years ago. So why are these ponies being so nice to him?

Expect elements of Comedy, Adventure, and Sad from time to time.
Sex tag added for somewhat blunt discussions about the birds and the bees.

Featured: 5/25/2014
Reason: Smeg knows. Love you anyway though!

Don't feel like reading this before jumping to the sequel? No worries, this blog post will catch you up to speed in about 2 minutes.

Now with a Spanish Translation: https://www.deviantart.com/spaniard-kiwi/art/Un-nuevo-dragon-1-11-923167089

Chapters (34)
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Megan Richards is a normal, everyday wife and published author of 'My Little Horsey'... however the tales she writes about aren't fiction, but stories from her past. She thought she put the world of ponies behind her, but sometimes the past has a habit of catching up with you...

G1 meets G4 in a hopefully epic tale of the past, the present and the future.

I own nothing, also, minor cameos from other Hasbro properties such as Jem and the Holograms, Transformers G1 and GI Joe.

Cover image made by the very talented Egophiliac and from here.

fanfiction.net link!
Equestria Daily link... one of these days.
TV Tropes page
All the Tropes page

Sequel: The Conversion Bureau: United We Stand

Side-stories and mini-arcs not able to fit into the main narrative: Side Stories of First Contact

Chapters (37)
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[Featured on EqD and FiM Fiction] It is that time again, the dreaded flu season. Not even Princess Celestia, the ruler of the sun and day, is safe from it. When Celestia contracts the flu, what pony could possibly nurse Celestia back to health? Why none other than her dear, loving sister of course! Enter Nurse Luna!

Between crazed guards, a palace staff desperate to please their rulers, and a crazed unicorn running around, no pony is safe from this madness.

This is 100% Approved by Twilight's Library.

Chapters (11)
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Friends who play together, stay together. That was the philosophy Rarity had in mind when she suggested she and Pinkie play a game of chess every week. Unfortunately for Rarity, however, Pinkie has a habit of changing the rules.

Chapters (5)
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Rainbow Dash has it all: a life of mystery and suspense, ups and downs, adventure and calamity. As time goes by, she finds herself swiftly becoming the most daring, awesome pegasus in all of Equestria.

She would gladly give it all up, though, just for a chance to tell Applejack how much she loves her.

Cover art by DarkFlame

Chapters (1000)
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In the warmth of her cloud home, Rainbow Dash is about to turn in for the night when she hears Scootaloo crying outside in the middle of a vicious blizzard. Plucking the freezing filly from the snow, Rainbow hopes to provide some much-needed comfort for the otherwise tough young pegasus, but she uncovers a disturbing reality that she knows she cannot handle alone.

Knowing only one pony that could really help her out, Rainbow enlists Twilight’s help, determined to set things straight for Scootaloo. But what Rainbow doesn’t know is that in her efforts to provide a better life for the filly, her friendship with Twilight will develop into something more.


Edited by Alcatraz, Rated Ponystar, Rocinante, Ponysopher, Marshal Twilight, Knight of Cerebus, ShimmeringStallion, and Jake The Army Guy

Proofread by Neko Majin C

Chapters (23)
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Now has a sequel, One Year Later


After a vigorous day of organising and sending reports to Celestia, Twilight notices Spike is feeling a little ill. He slowly grows more and more cold, before finally falling into a coma that Twilight fears is her own fault.

Going to the Princesses for help, Twilight eventually is brought before an Elder Dragon and comes to the realisation that she may have failed as a caretaker, a friend and as an older sister.

~~~
*EDIT* Okay, okay. You guys win - I'll write an additional chapter or two. I've marked this story 'Incomplete' for now. Follow up chapter has been done. If you want more, let me know. I'm sure there are a few other characters I could write a chapter on (Except for the dragons, of course)

*DOUBLE EDIT* Okay, wow. I seriously didn't expect this to take off as well as it has. This is honestly probably one of the best days of my life. I'm so glad and happy that you've all enjoyed the story.

Chapters (4)
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[ Inspired off Season 5 Finale - Nightmare Moon Verse ]
Social reject, blank flank, and failed candidate for Celestia's School for Gifted Unicorns, Twilight Sparkle's life couldn't get anymore depressing even if she tried. Yet still she looks to the other things in her life to get by, such as her job selling donuts at Joe's Bakery, her best friend Smarty Pants, as well as her inspiration to someday be as great as The Great and Powerful Trixie herself! Life isn't as bad as it may seem, and she enjoys the simplicity of her daily routine, the peace of her recluse world. That is until suddenly she is targeted by the current ruling body of Equestria, Nightmare Moon herself!? Perhaps she spoke too soon. Better run Twilight, destiny is calling!

Chapters (38)
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Many years ago, shortly before the birth of one Twilight Sparkle, Celestia, ruler of Equestria, found a small item in a forest. That item? An egg. Around the same time, in another place, Celestia, ruler of Draconica found something small in a forest. That thing? A pony.

Art(C)me
Ponies(C)hasbro
dragons(C) ?

Chapters (49)