This story is a sequel to The Man With Two Names

For the past year, Jeremiah Walker has wandered Equestria in the company of Trixie Lulamoon, seeking atonement and passage back to his own world, unsure if he will ever find it.

For the past year, Loose Leaf has investigated the events surrounding the human’s disappearance. He releases a full report of that night’s riot, a story Ponyville isn’t quite ready to hear.

For the past year, Spike has built a fledgling movement in Ponyville, fighting for non-ponies’ rights to citizenship. The tales of prejudice in Loose Leaf’s report invigorates the campaign, but draws opposition to the growing cause.

Now that the report is circulating across Equestria and their cover blown, Walker and Trixie march onward to the newly emerged Crystal Empire, following the only lead he has back home. There he runs into the frantic Twilight Sparkle, the pony who urged along his departure from Ponyville, and now needs his help to save this kingdom. Alongside her is Spike, who recognizes the human is just the figure his movement needs.

Uncle lives a very fulfilling life at his antique shop. It's peaceful and quiet for the most part, just how he likes it. Of course, he's a skilled chi wizard, so he knows better than to actually let the universe know that he's content. So he complains.

A lot.

Then one day, a basket containing three infant magical ponies arrives, and his peaceful life goes out the window...to be replaced with, perhaps, something a little more than contentment.

The universe, apparently, is smarter than he gave it credit for, because now he has "Three More Things!" to complain about to hide just how much they mean to him.

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Part of the PWNY-verse.

First chapters take place approximately 10 years before the events of the first episode of the show.

Edit: Cover Art put together by Shadow Bolt
Edit 2: New Cover Art by Swan Song. Link to his page in image source.
Edit 3: Level Dasher commissioned an image of the CMC with their new Cutie Marks from Katakiuchi4U over on Deviantart. Here's the pic!

This story is a sequel to Stardust

Times are changing for Equestria as Twilight’s return brings with it news of people and cultures from beyond the peaceful world everypony knows. Aid and volunteers are freely offered to help the besieged humans of Earth because every Equestrian knows that’s what good friends do. Unfortunately, making friends can also have the unintended consequence of making enemies.

When the monsters besieging the humans strike at Equestria with a level of brutality not seen in over a thousand years, the cry for help is sent to all the kingdoms of the world. Honored allies step forth to fulfill ancient treaties and oaths. Enemies, old and new, bury their grievances. An alliance never before seen in Equestria will be created to combat the monsters from the void.

And because of these events, a grim but welcome sibling to the XCOM project is born.

(XCOM/FiM Crossover)
(Sequel to Stardust, which I recommend reading before starting this. Fortitude Amicitia and Broken aren't required reading but are supplemental to the storyline)
(Gore tag for blood and violence)
(Alternate Universe tag because of the divergence from canon that Stardust has caused)
(Uses elements of Season 4)
(Coverart produced by the amazing Carnelian!)
(Many thanks to Arzoo, BradTheBrony, Vandenbz and Setokaiva for prereading!)
(As of 03/07/2016, the prereading team consists of Arzoo, BradTheBrony, Noble Cause and Metallusionsismagic!)
(Complete with it's own TVTropes page as part of the Stardust continuity. Could use some updating!)
(Character tags will be added as chapters are added!)
(Featured 5/12/2014! Thanks folks!)
(Possible spoilers in the comments! BEWARE!)

Isolated from her friends and taken prisoner in the middle of a war, Twilight must deal with the very real dangers of being percieved as an enemy as well as the nightmares of her arrival on 'Earth'. Can she overcome her own fears and the fears of her captors? Will the wayward unicorn's assistance be a boon or a curse to the 'humans?' Most importantly, will she ever find her way home?

"In short, it's a story of friendship and plasma rifles, with the emphasis on the friendship. The characters are well written, the XCOM setting is fleshed out very well, and the story is compelling. If you love XCOM, you'll love the story, but even if you've never heard of it, it's more than worth giving the first 3 chapters a read.

There's excellent action later on, but the real strength lies in the collision between the friendly and naive world of Twilight Sparkle and the desperate world of humans fighting a losing war for survival and willing to do anything to turn the tide."

--Arzoo

(XCOM/FiM crossover)
(Cover art commissioned by a friend and created by the magnificent FoxInShadow!)
(Original cover art by the amazing Carnelian can be viewed here!)
(Gore tag for blood and some violence)
(Many thanks to the studius OminousTen, Arzoo, xXFluttershyForeverXx and finally Setokaiva for giving my rambles a once-over)
(Now with it's own TV Tropes page! Get to tropin' folks!)

The Great Freeze. Was it our hubris in controlling the sun, or was it that others started to covet that control? At this point, the whos and the whys don’t change anything. Our star is dying, and those responsible for it are long dead. Their causes and motives, lost to all but a few.

For the past hundred years, our sun has been growing dimmer, kept alive only by Celestia’s constant efforts. But not even she nor the legion of magi and scientists can stop the inevitable.

Our only choice is to flee to a new world, one that could give our doomed species a second chance. The Seeding colony ship is that chance. There are so many worth saving, and yet so very few seats.

May our children never forget the sacrifice of those we leave behind.

~Excerpt from Princess Twilight Sparkle’s journal three days before Seeding.

While this fic will borrow heavily from Beyond Earth, it will be written so that you do not have to know anything about BE to enjoy the story.