EAunthood Issues
MLP: FiM
Comedy
Drama
Slice of Life
Luna is forced to introduce the Tantabus, Mk. II to Celestia.
Celestia
Luna
OC
Tantabus
Rambling Writer · 5.5k words · 2,109 22 · 29k views
ETwilight Sparkle Lays An Egg
MLP: FiM
Comedy
Drama
Princess Twilight Sparkle discovers a fact about alicorn reproduction she never expected. So do the other princesses.
Twilight
Spike
Celestia
Luna
Cadance
Georg · 3.5k words · 2,034 21 · 27k views
EThat Changeling's a Pony!
MLP: FiM
Comedy
A changeling gets kicked out of the hive for being a pony.
Changelings
Raugos · 4.2k words · 1,592 15 · 17k views
EThe Dangers Of Teleporting While Intoxicated
MLP: FiM
Slice of Life
Princess Celestia has a problem. Or perhaps it's Twilight Sparkle that has one. Namely, drunk teleportation.
Twilight
Celestia
naturalbornderpy · 2.6k words · 1,582 15 · 18k views
EThe Lazy Dragon of Dragonvale
MLP: FiM
Slice of Life
Once upon a time there was a very lazy dragon who did not want to find a town to pillage. So he decided to make one of his own.
OC
Starswirl
Georg · 3k words · 1,858 19 · 19k views
ESparkles and Scales
MLP: FiM
Slice of Life
Twilight Sparkle is the Element of Magic, the personal student of Princess Celestia... and a dragon, but it hadn't always been that way.
Alt. Universe
Twilight
Spike
Dragons
Winter Quill · 4.5k words · 1,339 12 · 18k views
EChangeling Space Program
MLP: FiM
Adventure
Comedy
Sci-Fi
The space race is on, and Chrysalis is determined to win it. With an earth pony test pilot and a hive full of brave-but-dim changelings, can she be the first pony on the moon? Inspired by Kerbal Space Program.
Chrysalis
Changelings
Minotaur
Cherry Berry
Kris Overstreet · 318k words · 1,893 20 · 26k views
TThe Power of Freedom
MLP: FiM
Zelda
Adventure
Comedy
Having long grown utterly bored with the destiny the gods had decreed for him, Ganondorf decided to take matters into his own hands and escape to a new dimension where he could be free. Even if that would mean turning into a pastel colored pony.
Alt. Universe
Crossover
Other
Greatazuredragon · 173k words · 2,056 23 · 25k views

Universes you may like

The Archer and the Smith A smith has her work cut out for her when a pony named Lyra shows up with a very special order. A Fallen World story. by Sharaloth 11,921 words · 1,317 · 14
The Last Pony on Earth One day, Earth. The next, everyone is gone and I'm a pony. What the heck is going on? by Starscribe 105,139 words · 2,091 · 84
My Little Marriage : Mary is a Mare Stan has been married to his wife, Mary, for nearly fifteen years. They're happy and live a very normal, almost picturesque life. Sometimes... life has a funny way of pulling a one eighty when you least expect it. by MerlosTheMad 216,808 words · 1,690 · 87
Project: Sunflower As the Earth is under threat, humanity reaches out for one last hope of salvation. by Hoopy McGee 243,094 words · 5,164 · 92
The Golden Armor Comet and Angel are two guard recruits who learn about life and love in Canterlot Castle. by Comet Burst 63,908 words · 4,104 · 113

Shout out to the Fallout Equestria universe as well.

Other Stories I recommend

The Keepers of Discord Being a statue can drive you mad, yes? by Hoopy McGee 11,445 words · 6,632 · 90
I'll Always be Here for You After Rainbow finds Scootaloo trudging beneath her house in a vicious snowstorm, she takes her in, only to discover something shocking. by The Abyss 92,035 words · 4,161 · 179
Voyage's End What happens when your entire understanding of the universe is flipped upside down by something as simple as a message in a bottle? by The DM 7,205 words · 2,868 · 36
The Life and Times of a Winning Pony Cloud Kicker has a wild life, and Blossomforth gets dragged along for the ride. by Chengar Qordath 361,449 words · 3,726 · 193

"keepers of Discord" is a brilliant, sad, slice of life. "I'll Always be Here for You" is a cute slice of life, that may steal your heart. "Voyage's End" just has an awesome ending, read it through. "The Winning Pony" is a brilliant slice-of-life, feel-good, story with a massive personal universe of stories to back it up. "Project Horizons" will have you either hating or loving it.

TThe Keepers of Discord
MLP: FiM
Sad
Slice of Life
Being a statue can drive you mad, yes?
Alt. Universe
Celestia
OC
Discord
Hoopy McGee · 11k words · 6,632 90 · 62k views
TThe Longest Night
MLP: FiM
Sad
Slice of Life
On the first night of Luna's banishment Celestia finds two alicorns in a crater.
Twilight
Celestia
Luna
Tundara · 6k words · 2,855 33 · 43k views
ERaven
MLP: FiM
Slice of Life
Anyone who has sought counsel from Princess Celestia has met Raven, her most faithful aide. She has been a veritable second shadow to the princess for as long as the castle staff can remember... longer than they can remember, in fact. Much longer.
Celestia
Luna
Raven Inkwell
SaintChoc · 6k words · 1,571 15 · 17k views
EArrow 18 Mission Logs: Lone Ranger
MLP: FiM
Adventure
Sci-Fi
A mission to investigate a far off world takes an interesting twist.
Human
Twilight
Rainbow Dash
Celestia
Luna
Other
AdmiralTigerclaw · 66k words · 6,218 88 · 83k views
EChangeling Space Program
MLP: FiM
Adventure
Comedy
Sci-Fi
The space race is on, and Chrysalis is determined to win it. With an earth pony test pilot and a hive full of brave-but-dim changelings, can she be the first pony on the moon? Inspired by Kerbal Space Program.
Chrysalis
Changelings
Minotaur
Cherry Berry
Kris Overstreet · 318k words · 1,893 20 · 26k views
ESunny Skies All Day Long
MLP: FiM
Slice of Life
Celestia's Day Off
Celestia
Main 6
PhantomFox · 8.5k words · 9,487 145 · 109k views
EVoyage's End
MLP: FiM
What happens when your entire understanding of the universe is flipped upside down by something as simple as a message in a bottle?
Alt. Universe
Twilight
Celestia
Luna
OC
Other
The DM · 7.2k words · 2,868 36 · 35k views
TFlitter
MLP: FiM
Romance
Adventure
Comedy
One changeling was already inside Canterlot... and he was as surprised as the ponies were.
Twilight
Celestia
OC
Changelings
Nyerguds · 27k words · 3,487 48 · 43k views
TNecromancy For Foals
MLP: FiM
Romance
Dark
Adventure
Far from Canterlot and forced to work in gem mines for cruel Diamond Dogs, a young unicorn named Bone Marrow's pursuit of his cutiemark reveals a unique talent: raising the dead.
Gore
Alt. Universe
Celestia
OC
Other
Queen Sanguine Dreams · 112k words · 2,720 36 · 26k views
THard Reset
MLP: FiM
Dark
Adventure
Twilight gives her life to stop a changeling invasion. Repeatedly.
Twilight
Spike
Chrysalis
Eakin · 36k words · 8,208 134 · 112k views
EThe One Who Got Away
MLP: FiM
Romance
Slice of Life
Equestria’s newest baron has just discovered that his new barony is entirely underwater, his new castle is a broken-down old riverboat, and his new subjects are… seaponies. Welcome to the Barony of Fen.
Celestia
OC
Seaponies
Georg · 22k words · 1,963 24 · 17k views
TThe Archer and the Smith
MLP: FiM
Adventure
A smith has her work cut out for her when a pony named Lyra shows up with a very special order. A Fallen World story.
Alt. Universe
Apple Bloom
Lyra
Sharaloth · 12k words · 1,317 14 · 16k views
TThe Changeling of the Guard
MLP: FiM
Adventure
Comedy
Not all changelings are fit for life in a hive. But that doesn't mean they're capable of life outside it, either. Join one such changeling as he tries to find his place in Equestria, and what the difference is between survival and living.
OC
Cadance
Shining Armor
Changelings
Royal Guard
vdrake77 · 245k words · 4,051 61 · 46k views
EA Legion Of One
MLP: FiM
Slice of Life
During its two year search for Shepard, the lone Geth discovered a world unlike anywhere else in the galaxy.
Crossover
Twilight
Other
GeneralLiberator · 20k words · 1,559 18 · 14k views
ENight Guards
MLP: FiM
Adventure
The origins of Luna's personal guards.
Luna
OC
Nightmare Moon
Bat Pony
Royal Guard
Raugos · 76k words · 1,677 21 · 31k views
TWhat a Strange Little Colt
MLP: FiM
Drama
Slice of Life
Rainbow Dash finds a maimed, unconscious young colt on the edge of Ponyville and rushes him to the hospital, but nopony knows who he is and something about him seems off...
Death
Profanity
Human
Twilight
Rainbow Dash
OC
Lynwood · 106k words · 3,151 49 · 32k views
TProject: Sunflower
MLP: FiM
Adventure
As the Earth is under threat, humanity reaches out for one last hope of salvation.
Human
Celestia
Luna
OC
Main 6
Hoopy McGee · 243k words · 5,164 92 · 52k views
EThe Platonic Pony Petting Café
MLP: FiM
Comedy
Slice of Life
Twilight and her friends open up a specific type of café in the human world.
Human
OC
Main 6
FrontSevens · 22k words · 1,346 18 · 18k views