It is the year 2038, and the Earth is slowly being consumed by a space-borne monstrosity dubbed the Black Tide, which is using nanotechnology to remake the planet into something hideously alien.

Erin Olsen works for Project Harmonics, humanity's last-ditch effort to find a new world before the Tide can wipe them out. But when that world is found, and it turns out to be occupied, Erin will need to find the courage to face the unknown in order to save the inhabitants of both worlds.

(Many thanks to Easteu for the fantastic cover image for this story!)

Now with its own TV Tropes page

There is now a follow-up to this story: Sunflower - Side Projects
Sequel: Project Sunflower: Harmony

Unhappy that her future as a member of the monarchy is denied by Celestia, Sunset Shimmer escapes through Starswirl's mirror into another world, planning to take it over to prove once and for all she was fit to rule. What she didn't expect—besides a species change—was to arrive in a world already conquered.

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Art (Will contain spoilers)

Sunset Shimmer - Bloody Sunset

Spoilers Ch. 11+: Angel - Angel and Sunny
Spoilers Ch. 18+: Princess - Comic
Spoilers Ch. 121+: Alejandra Acevedo - Flying at the speed of death
Spoilers Ch. 161+: Apple Bloom - Bloom
Spoilers Ch. 180+: Food - Sunset's Party Dress
Spoilers Ch. 185+: Fugue - Fugue by Rametep
Spoilers Ch. 197+: Exhausted

(Art is always welcome!)

WARNING: CONTAINS SPOILERS FOR THE WHOLE STORY: TIMELINE

All of Equestria is united in celebration for the return of their beloved Princess Nightmare Moon. But when Celestia and everypony else recieve her she's skeletally starved, filthy, and very nearly dead. Meanwhile, while everypony's eye is turned, a lusty Blueblood pursues Twilight Sparkle, intent on adding her bloodline to his own so his family might step closer to godhood. (Alternate Universe, there never was a Princess Luna)

Desert Mirage lives in a world full of guns, lasers, explosives and people competing to be the best of the best. There she excels at what she does: hunting. She started as a nobody, and yet became one of the most sought-after gunslingers.

Sunset Shimmer was practically born the best of the best. Selected by none other than Princess Celestia to be her prized student... until she ran away to another world in search of power. Through trials and suffering she was eventually taught humility and friendship.

At first blush, they don't have much in common. But their connection runs deep, and sooner or later it will change their worlds forever.