This story is a sequel to Crystal's Wishes

Love had finally happened to her. Crystal Wishes married the stallion of her dreams and couldn't be happier with her life... until she discovers why ponies treat military spouses with so much respect. Life after the happily ever after isn't as easy as she hoped it would be when married to a royal guard.

This story is a sequel to Secrets of a Royal Guard

Duty, honor, and loyalty above all else. That was what Silent Knight had been told ever since he was a colt. They had guided him all his life and he was more than ready to follow in his father’s hoofsteps by dedicating himself to the Royal Guard. Then he discovered something else he had never expected: friendship and love. He learned that he owed these values not just to his job, but to his wife, his friends, and his family. Unfortunately, he learned that too late.

War has broken out between the gryphon kingdoms and Equestria is stuck in the thick of it trying to protect their ally, Nordanver. As Silent marches off to war, he must contend with the guilt that battles within him. He played right into the claws of Sudramoar's sovereign, and now he must leave his newlywed wife behind so that he can pay the price for his foolish actions.

Knowledge of the Quill & Blade AU is recommended to understand this story. It is a direct sequel to Secrets of a Royal Guard.

This story is a sequel to Memoirs of a Royal Guard

From the outside looking in, life has never been better for Silent Knight. He is the first pony in a long line of Royal Guard ancestry to earn a commission, he has a loving mare by his side, and he bears the kingdom’s highest honor for bravely risking it all to protect Princess Luna. The future shines bright with potential, but the shadows of the past lurk at every twist and turn that lies ahead.

Guilt, anger, and regret are constantly at war in the depths of Silent Knight’s mind. Despite his best efforts to enjoy the life he has, he finds himself trapped in the past, reliving the moment when his unit was ambushed and his ponies were killed. He refuses to show any weakness, instead hiding everything behind a tough face to protect himself and those he loves. But his true feelings—and what he plans to do with them—shackle everything he holds dear with chains forged in secret.

Secrets of a Royal Guard is a comedy series with romantic, dramatic, and adventure elements. It features an original character cast and their interactions with the princesses they protect. It is recommended that readers be familiar with Memoirs of a Royal Guard.

Quill & Blade Universe

This story is a sequel to Culling of the Hives

It's been twelve years since Twilight awakened as a changeling. With Phoenix Roost's focus on economic and population growth, the hive has grown strong.

The rest of the changeling hives have been ravaged by war for years with Twilight's brood remaining aloof. Sphinx psyker immigrants have dispersed throughout not only Equestria but as far as the Griffin and Minotaur nations, eager for a new life away from the paranoia of their homeland.

Yet for all of Twilight's desire for leave the rest of the queens to their wars, the Home Guard's proclamation will force Twilight to return to the jungle of her rebirth.

Real cover art pending.

As always, big thanks to Boldish42 and A Bitter Pill for editing.

This story is a sequel to Stardust

Times are changing for Equestria as Twilight’s return brings with it news of people and cultures from beyond the peaceful world everypony knows. Aid and volunteers are freely offered to help the besieged humans of Earth because every Equestrian knows that’s what good friends do. Unfortunately, making friends can also have the unintended consequence of making enemies.

When the monsters besieging the humans strike at Equestria with a level of brutality not seen in over a thousand years, the cry for help is sent to all the kingdoms of the world. Honored allies step forth to fulfill ancient treaties and oaths. Enemies, old and new, bury their grievances. An alliance never before seen in Equestria will be created to combat the monsters from the void.

And because of these events, a grim but welcome sibling to the XCOM project is born.

(XCOM/FiM Crossover)
(Sequel to Stardust, which I recommend reading before starting this. Fortitude Amicitia and Broken aren't required reading but are supplemental to the storyline)
(Gore tag for blood and violence)
(Alternate Universe tag because of the divergence from canon that Stardust has caused)
(Uses elements of Season 4)
(Coverart produced by the amazing Carnelian!)
(Many thanks to Arzoo, BradTheBrony, Vandenbz and Setokaiva for prereading!)
(As of 03/07/2016, the prereading team consists of Arzoo, BradTheBrony, Noble Cause and Metallusionsismagic!)
(Complete with it's own TVTropes page as part of the Stardust continuity. Could use some updating!)
(Character tags will be added as chapters are added!)
(Featured 5/12/2014! Thanks folks!)
(Possible spoilers in the comments! BEWARE!)

This story is a sequel to Past Sins

In the wake of the battle with Tirek, Twilight Sparkle becomes fixated on restoring Golden Oaks Library. After all, it was home for her little family of three. But as her attempts to repair the books and tree continuously fail, her friends must take matters into their own hooves. Discord, as the good friend he is, tosses Twilight and her extended family into an unexpected adventure while Twilight's other friends get to work on the new crystal palace.

All together, they'll do everything to ensure Twilight and her family have a place to call home when they reach the end of the road.

On a dark night filled with even darker magics, an insane cult attempts to give Nightmare Moon a body and life of her own, utterly separate from Princess Luna. But, when the spell is interrupted by Celestia, something unexpected is created.

Now, a little black alicorn filly named Nyx finds herself living under the care of Twilight Sparkle, only to be haunted by memories and emotions from her past. Is she Nightmare Moon reborn or is she simply a doppelganger with a soul and mind of her own? Can Twilight Sparkle protect Nyx from those who refuse to see past her dragon eyes and black coat?

Or, will Nyx be forced to inherit the sins that may not even be hers and become the greatest evil Equestria has ever known?

For as long as any of the Cutie Mark Crusaders can remember, Diamond Tiara had always been the biggest bully they knew. But when that said bully dies in an accident, each of them starts to go through their own emotional experience from this sudden change in their lives. Each will learn more about themselves and about the pony who they all thought they knew before she is laid to rest.

***Takes place just after season 3 but before season 4. This story is completed.***

Now with TV Tropes page

This story is a sequel to The Assassination of Twilight Sparkle