Twilight thought she was the daughter of Twilight Velvet and Night light but when she becomes an alicorn a long kept secret is revealed

This story is a sequel to Inner argument

On a stormy night, Twilight surprisingly stops by Sunset's apartment. Only the visit isn't because Twilight wants to surprise her girlfriend. Sunset learns that Twilight has been through some rough times and she'll help the girl in any way possible to get her through those times.

When Twilight is stolen from her home, fate intervenes and brings her straight to her destiny. After growing up sheltered and loved by the spirits of the Tree of Harmony, Twilight will grow into her place in Equestria like never before while she searches for the family that raised her and gets to know the one she's lost.

(Unapologetically OP Twilight, if you’re going to nitpick that point then you are welcome to leave at any time.)

Twilight discovers that she is a direct descendant of Discord. (Takes place before S3... Obviously.)

This story is a philosophical and comedic telling of my journey, becoming one with Fluttershy, after waking up one morning quite yellow and quite confused.
Set it the "PonyEarth" verse (group here: PonyEarthVerse)
Rated teen for mentions of sexuality etc. (and guns!)

WDTP: S2E26\NC

The picture is being used with permission from the artist, original here: Soapie-solar

Twilight Sparkle always preferred to work alone. She looked at group projects with disdain and co-presentations with disgust. They were excuses for others to shove off their workload on her.

But Twilight Sparkle was also smart. And smart people knew when they had to overcome their personal feelings for the greater good of the world. Which meant that she had to ask Sunset Shimmer - the girl who had yelled at her and made her cry yesterday after the Tri-Cross Relay - for help figuring out how to use her thice-damned Amulet, lest she lose control of it and the inadvertently make the entire world explode in a spectacular burst of lava.

Okay, maybe she was overreacting a bit. And Sunset probably wasn't that bad of a person. That said, she would still have to share her Noble Prizes and recognition.

But it didn't really matter, because she wouldn't be around Sunset Shimmer around for long anyway. Just a few experiments here and there. Give it a couple of weeks and their partnership would be over. Right?
--

Sunset and SciTwi start out trying to figure out how the Amulet works and win a couple of Nobel Prizes, but they end up discovering a whole lot about themselves on the way there.

alternate tag added because a lot of freaky shit is gonna go down

My version of Lauren Faust ending up in Equestria. I probably got her character all wrong. Hey, I never met her, cut me some slack.

So, Lauren Faust is Queen of Equestria in this story. How will she react? How will everypony else react? And what does Pinkie's chimicherrychangas have to do with all of this? One thing is clear already. For Twilight and her friends it won't be the same.

Added AU tag, 'cause someone mentioned it would be safe. And when I think about it, I don't think we ever get to learn who the princesses parents are.

Just a note, this is set during season two. So the events of "A Canterlot Wedding" haven't happened yet.

Cover Art done by ZuTheSkunk

04.18.2015 Wait what? This story is hot? Wow. Thanks guys.

I got an editor. It's GaleSinger

twilight goes back in time to save Equestria. By doing so, she accidentaly teleports the corpses of the mane six with her. They went back to the time where they met Chrysalis, because that's where it all went downhill. But her spell didn't only bring her back in time, it also replaced two creatures, switching from roles. If Chrysalis was now a good guy, who was the bad guy?

The Daleks invade Equestria, but the combined power of the Doctor and the Princesses was enough to dispose of the ship and it's monstrous crew... that is, except one. Dalek Sar disgraced himself, and as punishment had his self-destruct disabled, had his connections to the rest of his race cut, and was stripped of many of his armor's powers. The fallen cultist of Skaro was then left to die, facing the Doctor head on while the others remained safe on the ship.
Never have they been so wrong. Alone and powerless Dalek Sar is captured, and then taken in by a small, cowardly, pegasus to live at her animal home. Through events no one could explain, he has made Fluttershy his eternal commander. And him, her eternal protector.
But when Celestia needs to have Fluttershy reform another powerful monstrosity. Discord, the spirit of chaos. We've all seen how Discord wrecks her home, pushes her to the limit... but what would her own alien death machine have to say about it?
Based on the terrible beginning to one of my other stories, Vortexes are Magic (it gets a lot better later on), but it'll play out very different. Warning, may(I'm undecided) contain lethal levels of Fluttermac in later chapters.

Everypony dies, but not everypony reveals a long-held family secret on their deathbed. Now the Apple family must deal with the fallout of Granny Smith's confession, leading to a shocking discovery.

The story is complete, with new chapters published every-other day until finished.

Featured 19, 21, 23, 25 & 27 May!!!

Thanks to Rdasher12 for editing!