(Inspired by A New Hero and An Unexpected Life)

One day, seven years before Twilight moved to ponyville, a young scarred up thestral colt woke up in the Ponyville hospital. Some ponies claimed that he saved them from a pack timberwolfs, but at the cost of his wings and memories from the fight. Now, he lives as a part time librarian, trying to find out his past. Little did he know, that the past will come to him.

(My Little Pony: Friendship is Magic belongs to Hasbro)

Kicked out of her Brother's wedding and betrayed by her friends, Twilight Sparkle is offered a chance by Arceus to go to the world of pokemon and start her life over. As she arrives, she is found by Ash Ketchum and his partner Pikachu and together they will travel through the Hoenn Region to become the very best like no one ever was.

WE HAVE A TV TROPES!

This story will be based on both the anime and Omega Ruby and Alpha Sapphire. So there will be Mega Evolution and some Pokémon from all the regions will be shown.

Cover Art created by: Mr Tech

Tragedy strikes the Sparkle estate one winter evening and Twilight finds herself cold, alone, and far from home.

Fortunately she stumbles across two fillies who may have more in common with her than she realizes. With no place else to go, nopony else to turn to, and no clear way back home, Twilight decides to stay with the fillies and their caretaker while she tries to piece together the mysteries of what happened to her family and why.

Bonds will be forged.

Secrets will be unraveled.

And a great journey will be undertaken.

Additional tags: Sad, Slice of Life (I don't care if it contradicts the Adventure tag, things are gonna get Slice-of-Life-y)

Far, far away from the Equiss system, the queen of blades is readying the launch of her newest weapon. A ship designed to infest an entire planet in secret, readying it for the eventual zerg invasion and softening up even the hardest target, Korhal. Unfortunately for the queen of blades, the untested zerg biotechnology is more difficult to master then she thought and the infestation ship vanishes after launch.

Untold eons later Twilight Sparkle is preparing for her entrance exam for Celestia's school for gifted unicorns only to stop when she sees a star fall into her new treehouse. The young pony sets out in the middle of a storm, intent on seeing this fallen star for herself.

What she finds inside will change not only her destiny but the destiny of all on Equiss prime.

Make sure to check out the sister story to this one.
Trigger warning, parasites. Starcraft Crossover!
Updates twice a month!
The story so far!

Naruko (Female Naruto) thought she knew a bit about these bonds the Hokage always talked about. However when she tries a mysterious Jutsu she is sent to a new land. In this new land, she will come to learn the truth about friendship and bonds, and at the same time realize she had no idea about such things before in her life.

She will learn a lot from this land and make friends while she and the others go on adventures and learn more about Equestria's past in the process. She and Twilight will also learn of a threat which puts all of Equestria in danger. Naruko will do all she can with the others to save their home, but what of Konoha? Will she return there? Will she even ever want to go back? This will have to be seen as the story unfolds.

Naruto and My Little Pony crossover.

When Twilight is stolen from her home, fate intervenes and brings her straight to her destiny. After growing up sheltered and loved by the spirits of the Tree of Harmony, Twilight will grow into her place in Equestria like never before while she searches for the family that raised her and gets to know the one she's lost.

(Unapologetically OP Twilight, if you’re going to nitpick that point then you are welcome to leave at any time.)