Cloudchaser is a perfectly normal pegasus pony living in Ponyville who never put much thought into love and romance.

When Cloudchaser and her sister Flitter are called upon to assist the pegasi of Ponyville for rainy season, the plucky pegasus steps up to do the best she can. But a chance encounter with a certain dark grey pegasus will change her whole outlook on life, love, and everything in between.

Cloudchaser/Thunderlane fic from Cloudchaser's perspective.

New Cover Image! It's a mock-up, but you get the picture! Made by yours truly.

Sequel! "Stormy Skies"

It is the year 2038, and the Earth is slowly being consumed by a space-borne monstrosity dubbed the Black Tide, which is using nanotechnology to remake the planet into something hideously alien.

Erin Olsen works for Project Harmonics, humanity's last-ditch effort to find a new world before the Tide can wipe them out. But when that world is found, and it turns out to be occupied, Erin will need to find the courage to face the unknown in order to save the inhabitants of both worlds.

(Many thanks to Easteu for the fantastic cover image for this story!)

Now with its own TV Tropes page

There is now a follow-up to this story: Sunflower - Side Projects
Sequel: Project Sunflower: Harmony

A pegasus woke in the woods. He was lost, injured, and had only the vaguest of dreams for memories; nightmares of a Canterlot engulfed in shadow and flame, of an invading swarm lead by one great and terrible dark figure. As he begins a new life, the dreams continue to taunt him. Will he ever find out who he was? And if he does, can he -- and his newfound friends -- accept what he finds?

(Credit also goes to Mekhazzio for help with editing)

TV Tropes page

Book cover art by viwrastupr

Twilight isn't having a very good day. An experimental spell blew up in her face, an army of changelings is attacking Canterlot, and she just died. Yet somehow, it looks like it's going to keep going downhill from here.

Given the chance to correct what's gone wrong, Twilight swears she's going to fix all this even if it kills her. Which it will. Frequently.

Cover art by Pixel Prism
Spanish Translation
Series TV Tropes page

It all started with a simple question: What if? What if Luna had ponies who noticed the beautiful nights she created. Would she have turned into Nightmare Moon? Would she and Celestia rule together for a thousand years? Would Twilight meet the rest of the bearers of the elements and become friends with them? Now, with the help of a new magic spell that she created, Twilight is going to find out!

Welcome to the Lunar Republic!

Featured 4/9/15

Hey guys, the story is back on. Progress is halted, though. Go read the blog post.

The Ponyville Mayoral Election is coming up, and Twilight is excited to root for Mayor Mare alongside her friends. That is, until she discovers that in Ponyville stallions are not allowed to vote. Twilight quickly gets mixed up with the Ponyville civil rights movement, but when the time comes, will she stand against her friends?

High Style, Photo Finish's aide and famous stylist, was trying to have a normal day, but few things are normal when Cloud Kicker arrives.

This story is written as part of the Winningverse (which is why I don't go in depth into exploring Cloud Kicker's character). If you don't know why Cloud Kicker is the way she is, then go read the Life and Times of a Winning Pony. It is by far a better story than this one.

However, I'd appreciate it if you came back once you were done.

When Twilight Sparkle slipped beneath the covers last night, everything had been fine. She had friends whom she loved, a teacher she adored, and a bright future ahead of her. But when she woke up, her blankets and quilts had been replaced by hospital gowns and padded restraints.

Everything is wrong and nothing makes sense; even her friends have changed. The doctors keep telling her that she is sick, that none of it was real and that it was all in her head. Yet she remembers a life far beyond the hospital walls. She couldn't have made it all up on her own. They must be lying… right?

Ask Asylum Twilight - Still updating regularly!
Equestria Daily
TVTropes
Asylum Fan Group
The Tartarus Project
Russian Translation
The Asylum 20,000 View Spectacular Stage Show!

Art:
Asylum Cover by conicer
Twilight and Twilight Smiles by dreamingnoctis
Mirror Twilight and Plague Doctor by Jaestring / BloodGoldWings
Twilight Smiles and Doctor AJ by conicer
Nurse Ratchet and Silas and What's in the mirror? by Archonix
Doctor AJ Sketch by Archonix | Colored and vectored version by ReFro82
Twilight's Asylum by Khan the Cake Lover
Smilight by HappySwitch
Twilight Waking Up by Dombrus
Fan Art by toxicdemon10
Asylum Twilight by Madness-With-Reason
Asylum Fluttershy and Asylum Ch 26 by Downburst-Backspace
Twilight and her Twin by v747
Birdgirl by sirValter

Readings and Videos:
Asylum Animated Trailer Video by formuladash
Reading by Gammarobot (SugarCubeRadio): All Chapters Here
Reading by Ender Brony: All Chapters Here
Reading by VisualPony: All Chapters Here
Reading by MelancholyIguana: All Chapters Here
Fan Trailer by Kaidan: Asylum FanFic Trailer Cuckoo's Nest

Sanctuary by Kaidan
Broadhoof Files: Dr. Humors by TypewriterError
Broadhoof Files: Corporal Phalanx Spear (Ret.) by Phalanx Spear
A Hearth's Warming Tragedy by Seven Fates

A special thanks to Breath of Plagues, Rex Ivan,
ChudoJogurt, Cynewulf, Death the Kid, Selbi, PrinceDolph, Blahman2816, Queue, and Gage!

Axan Zenith - Dr. Dreamer
Dratini4 - Way Finder
psychicscubadiver - Bright Mind
Velkaden - Dream Chaser
Reese - Silver Glow
Viola Heartstrings - Clover
Archonix - Spinney Whiteacre

[Prototype2] / MLP:FIM crossover

Not all of Alex Mercer's "Evolved" were loyal psychopaths. Some were simply desperate people who Alex thought he could easilly control once he infected them with the "Mercer Virus". However Alex was never one for fool proof plans as he quickly finds out when only a handful of his Evolved army show up at that fateful final battle between him and Heller. Oskar was one of the many of dozens of Evolved that stood by and watched as Alex was consumed and now he finds himself in a strange cutesy land filled with talking ponies. Can this viral being find peace in Equestria or will his need to be secure get in the way?

Warning: No editor so a few grammar errors can be expected :S hopefully nothing jarring though

A big thank you to EvilBob for the picture and to Fluttershade5300 for doing some post release editing for me

Each night I’m trapped in the dark, immobilized. I hear whispers as they operate on me: they say I shouldn’t be alive. Twilight refuses to tell me about the operation. Sometimes she can’t look me in the eye. What did they do to me?

Nothing used to scare me: I kicked a dragon in the nose, defeated gods of chaos and hatred, and control the weather. Now I feel broken. My memories have shattered, I feel wrong, and I’m afraid to tell anypony how scared I am.

I can’t even do the rainboom anymore. Who am I? I’m no longer the best flyer in Equestria, yet everypony assures me I am. Why won’t they tell me the truth?
↓↓ Credits

Special Thanks:
Dreampaw the artist. Best cover art.
Editors:
ArgonMatrix - Fixed 128 errors in chapter one alone.
Animus - who is awesome and for hire.
BronyWriter - The only author to punch Celestia in the face, and live.
Jaestring - Artist, Editor, and Female all in one.
Abcron - European editor, which means his time zone and my actual sleep schedule are aligned perfectly!
The Parasprite. Need I say more?
Selbi - If your editor isn't German, you aren't trying hard enough.
OctaviaHarmony - His avatar is as sexy as his editing.
RenegadeTimelord - Doctor who?
Akumokagetsu - Awesomesauce.
(Wow, a lot of editors came and went.)