Many people have many theories about Scootaloo. Some think she's an orphan. Some think she's part of an abusive household. Others still worry that she's somepony's illegitimate offspring that's hidden away.

However, the truth is far from that. She has a loving mother and father, and she means the world to them both. They've gone to great lengths all for her.

However...they're just a little...strange. Especially since neither one is comfortable with coming out except at night.

Rated Teen for some adult language.

Partially inspired by this story by Colonel J.

Edit: New Cover Art by G_Haze! Found here.
Edit 2: And G_Haze has decided to update the cover art, and damn does it look good.

The past always comes back to haunt the present, there is no escaping the inevitable. For decades, Celestia has kept a secret from her student. A secret she made out of pain, and through pain will be revealed for all to see; for Twilight Sparkle is the secret daughter of the Sun.

Now, there will be consequences.

Consequences, they come in all shapes and sizes for every decision. For every action there is an equal and opposite reaction. These words are lessons that Princess Celestia should know, bits of wisdom she practices in her rule of Equestria. How is it then, that when faced with a decision, she chooses the one that would inevitably bring the most pain? How is it that she couldn’t bear being recognized as the mother of her child? And why? Twilight Sparkle is about to find out.

Disclaimer: (I do not own the picture; Title Picture owned and designed by KitsuneHino; Source: http://mel-rosey.deviantart.com/art/By-my-side-364777307) (I do not own any of the characters, places, events, etc. outlined in this fanfiction, MLP FiM does under Hasbro, give them the credit.)

A flip of a coin. A twist of fate.

Twilight Sparkle, younger sister of Princess Celestia's personal student, Shining Armor, grew up listening to her brother's bygone dreams of joining the elite of the elite: The Royal Guard.

Now, fresh out of the Academy, this young mare is ready to prove herself equal to the deeds of the great soldiers she read about as a filly. Too bad the princess she ends up protecting isn't Celestia.

A changeling gets a very risky and clever idea.
Pretending to be an advanced magic doll left as an anonymous gift in front of Twilight Sparkle's home.
It's so audaciously stupid there is no way it's not going to work.

This story is a sequel to Celestia's Tiny Student

(Title changed from "Ponyville's Tiny Librarian" for reason pointed in this blog )

Twilight Sparkle is a one-kilogram pony the size of a large rat, shrunken by Princess Celestia following her entrance exam to the Celestia’s School for Gifted Unicorns to ensure that her power surges would not pose a danger to the ponies around her.

She’s spent thirteen years full of hard training at her new size, facing the life-threatening experiences that came with living in a world of giants. To survive those thirteen years of hardship and joy, of learning and adventure, and of pride and humility, Twilight has challenged herself to be stronger, to overcome any obstacle.

Now that tiny Twilight is on her way to Ponyville to oversee the preparations for the Summer Sun Celebration, how well will this miniature mare fare outside of the confines of the castle? How will the other Element Bearers react to her? How will Nightmare Moon react to the tiny unicorn? Is Twiny prepared to face Ponyville, and, more importantly, is Ponyville prepared to face her?

Credits:
Art cover - kc day

Top editors: (editing and rewritting for months, hope quality is to your liking).
Kydois
Georg

Nightmare Moon's sentences editor:
Bahatumay

Applejack accent editor:
Crimson Star (Chapter 1 - Applejack)
Rebel Brony
The Notebook is grounded

Pinkie sentence's editor:
Plump it UP

Other editors:
Hereward
tana1100
Lab (small editing from prologue to chapter 4)

Pre-reader:
Rated Ponystar

To celebrate the release of this sequel, I created a group called “Twinyverse” for all fans of this story where you can talk about it and track all side stories with ease.
The Twinyverse Group

In the aftermath of her battle against Tirek, Twilight Sparkle is unwell. She wants more. She needs more. And she is afraid of what others might think of her.

But even in the midst of her growing despair that she has betrayed everything she stood for, she learns something about friendship and what it means to be an alicorn.

For the longest time, Epona has served as the loyal mount of Link, hero of Hyrule. But one day, she finds out that she's actually from a world inhabited by intelligent, colorful equines. And not only that: Her daughter is one of the six main heroes from that world. But that is only the beginning.

When the worlds of Equestria and Hyrule get into contact after a millennium, lots of hidden conspiracies are revealed. Evil fiends from a time long forgotten emerge and some ponies begin to understand their powers as sages. But the one important question will be: What will Epona choose? Her friends from Hyrule? Or her family from Equestria?

A young filly writes to the newly-crowned Princess Twilight, asking for advice.

She's made one small mistake, though, in assuming Twilight feels qualified to give it...

Midnight Storm has had a hard life. She's wandered from city to city for the past three years, and they've all eventually run her out after they've found out what she is. Against her better judgement, she's placed her last hopes on the small town of Ponyville.

The residents here are nice enough, but when they find out what she really is, will they accept her, or drive her out like all the others? And when Celestia finds out about her, what plans does the Princess of the Sun have in store for the mare?

Cover image by Valkyrie-girl

Story now included in The Goodfic Bin

In the warmth of her cloud home, Rainbow Dash is about to turn in for the night when she hears Scootaloo crying outside in the middle of a vicious blizzard. Plucking the freezing filly from the snow, Rainbow hopes to provide some much-needed comfort for the otherwise tough young pegasus, but she uncovers a disturbing reality that she knows she cannot handle alone.

Knowing only one pony that could really help her out, Rainbow enlists Twilight’s help, determined to set things straight for Scootaloo. But what Rainbow doesn’t know is that in her efforts to provide a better life for the filly, her friendship with Twilight will develop into something more.

Edited by Alcatraz, Rated Ponystar, Rocinante, Ponysopher, Marshal Twilight, Knight of Cerebus, ShimmeringStallion, and Jake The Army Guy

Proofread by Neko Majin C