In 2185, during his campaign against the Collectors, Commander Shepard discovered a previously unknown species whose origins predated any other race in the modern galaxy. Following a daring rescue from their ancient sanctuary, the Equestrian Herd was brought back into the galaxy where, for the first time in eons, they must walk their own path.

Knowing full well the terrible threat that lingers on the edge of the galaxy, the leader of this newly freed race fights to secure her people’s future while attempting to prepare for the storm on the horizon.

This is her story.
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The long awaited Sequel to Mass Effect 2: The Equestrian Equation This is a reader directed story. Your choices will shape events.
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Also, this series has its own TVTropes page now! (Special thanks to user CrowMagnon for setting it up).

Twilight Sparkle was presumed to be dead. Destroyed without even a body to bury, the young victim of a deadly magical surge that claimed the lives of many others along side her. More than a decade later, reports of a violent murder by a pony bearing her name are brought to Celestia and Luna's attention. A trail of carnage leading directly towards Canterlot's doorstep, brought by a pony who strikes without mercy. As Twilight approaches, in service to an unknown master, the Alicorn Sisters desperately try to uncover what happened all those years ago.

Edited by Zintegy and The Pink Mugsy

Chapter Heading Art by KirillK
All Sketches and Artworks can be found HERE

It really hasn’t been a great day for Discord: First his appendages mutiny, then he discovers that he’s got a conscience, and if to add insult to injury, Celestia suddenly wants him to babysit her little sister on her adventure to rescue the changeling race. As if he didn’t have anything better to do! Can you imagine it, the spirit of chaos trapped in a land which is full of nothing but sand, stone, and historical ruins? To immortals, however, history is but another word for their own past.

Join us as Discord reports this high strutting tale, full of excitement, forgotten treasures, exotic cultures, romance, and not to forget a sizeable deal of chaos.

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Sequel to White on Black, but if you're ready to accept some weirdniss in the beginning readable on it's own.

They say beauty is in the eye of the beholder, but what if all who behold you see naught but a monster? Given the chance, can this view change? Sometimes, it just takes one person to reach out...and help.

This story is rated T for violence, use of alcohol, and suggestive sexual references and situations.

Disclaimer: I do not own any of the characters directly associated with My Little Pony: Friendship is Magic, nor the original story.

Cover art used with full permission from mysticalpha

As I'm sure you can tell by the dates of submission, this story was started quite some time ago. Instead of completely ignoring things that have happened since season 3 on, this will be an alternate reality that branched from shortly before Twilight began the path to become an alicorn.

Princess Luna is bored.

She spent a 1000 years on the moon and while she is happy to be back to her old self (even if she knows her evil scheme would have worked if it weren't for those meddling mares!) her sister refuses to let her do anything fun. .

The Princess of the Moon is fed up! She is going to go on an adventure! She is going to find Queen Chrysalis and punch that bug in the flank! And along the way she is going to fight bears, fall in love, explore strange worlds and everything else all the guide books say should happen on an adventure.

Too bad her sister (The ever calm and collected Celestia) has decided to tag along and bring their niece (the sex-crazed Cadence), nephew-in-law (the sane and rational Shining Armor) and brother (the grumpy OC/Oceanic Creature Tydal) along for the ride.

What happens when the gods go on a road trip? Chaos, insanity, and mayhem, of course!

(This is the spiritual sequel to "The Many Secret Origins of Scootaloo". While you don't need to read that story to enjoy this one, it wouldn't hurt to give it a glance to understand why many of the characters are the way they are).

TVtropes' Page Can be found here: http://tvtropes.org/pmwiki/pmwiki.php/FanFic/TheGodSquad

The sequel, The God Squad: Equestria's Most Wanted, will be out soon.

Commander Shepard remembers firing the crucible. She remembers she had to make an important choice. She remembers good friends, a lover, and plenty of loyal crewmen.

She just can't remember what her choice was. What the threat she was striving so hard to end was. Or what the faces of the most important people in her life look like.

She also has no idea how she wound up in the monster filled forest she's come to call home for the past eight months. Or how she picked up a snarky A.I. making its home in her omni-tool.