The Mane 6 are captured by Hugo Strange, and are sent into Arkham City. He separates them and steals the Elements of Harmony. He plans to use them for Protocol 10. They must find a way to get the Elements back, get reunited, and get back to Equestria.

This is a fan-written side story of what is happening in Batman: Arkham City. Its a story about the 6 main Ponies, not Batman. I first uploaded this story on my Deviantart on February 13, 2012. I'm just now putting it on here also.

This story is a sequel to Fluttershy's Mansion

Fluttershy thought her days as a Ghost Hunter was over. But what she didn't know that it was far from over. When Ghost Studies ask for help, Fluttershy is throw in the Ghost Hunting busies once more, only this time the force behind it is unknown and familiar at the same time. Can Fluttershy handle five mansions instead of one? And can she discover the locations of the Dark Moon?

Base off the Luigi's Mansion: Dark Moon game and a lot longer then the first story.

And there going to be something different in this story. Read to find out, Happy Hunting!

Image own by Niban-Destikim

Alone and far from home, Luna has sought out the changelings. Completely in their power Luna is entirely at the whim and mercy of the Queen of changelings, but what has prompted this strange encounter?

With Chrysalis' defeat, Princess Luna recalls a bitter memory from her own darker days. Resolute on absolving herself, the Princess finds it in her duty to prevent the death that she foresees: she cannot allow herself to let the darkness of Chrysalis to reconstruct itself outside Equestrian borders.

She sees in herself a chance at atonement--a change to forgive herself for past wrongs.

Every day Celestia shares light and love with all the ponies of Equestria. In turn, they share their love with her. Still, the princess senses there is something missing. Something her heart longs for.

Something her responsibilities have denied her for all these years.

As luck would have it, she’s given a gift that will let her experience her deepest hearts desires and take her to a place she may never want to leave.

Ever.

Inspired by the Alan Moore story, For the Man Who Has Everything.

Starlight Glimmer's attempts to stop the Rainboom pulled Twilight Sparkle into many possible timestreams.

In one, Rarity and Rainbow Dash survived Nightmare Moon's victory over the forces of light, eventually attaining positions of prominence and comfort in the Nightmare's service. But when the unexpected visit of an Alicorn and Dragon sheds light on a growing conspiracy against the wicked mistress of the night, Rarity and Rainbow Dash may yet be inspired to risk what they have gained to join the fight for a better world.

Yet darkness lingers even in the hearts of some who would oppose the Nightmare, and not all agree on what a better world would look like...

This story would not have been possible without the indescribably vast help and unwavering support of Moosetasm, the pre-reading assistance of I-A-M and Waxworks, as well as the editing prowess of OnionPie and Pascoite! Cover by Novel Idea, using Rarity by miracle32 and background by Drakizora! Featured on Equestria Daily 17Jul.2016! Featured on FimFiction 2Feb.2017 and many times thereafter!

Following a Changeling attack that scatters every resident in Ponyville, Applejack holes up in her family home with only Apple Bloom for support. The doors and windows have been boarded shut. A thick fog covers everything in sight. Soon the first visitor comes to her door.

Now the only question is whether they're actually who they say they are.

Edited by spigo.

This story is a sequel to The Darkness of Love

Spike saved the Elements of Harmony, but a past mistake had caught up to him. He died a week later, leaving Twilight heartbroken, holding a crystal that contained half his soul from before he succumbed to dark magic.

Now, some months later, Twilight has spent her time searching for the key to bringing Spike back. With everything in place, and Cadence assisting her with Spike's resurrection, will everything go as planned, or will something falter and leave Spike half of or twice what he used to be?

Opening theme for this story is: Awoken - Sound of the Aviators

Rated 'Mature' for Violence and Sex. To see sex chapters, click on the link here.

Just about everypony in Ponyville knows Scootaloo. She's your normal, carefree pegasus foal who crusades for her cutie mark, zips around town on her scooter, and looks up to her idol Rainbow Dash. But what if that's not all there is to her? Scootaloo worries that her friends will find out that she's not the foal they know and love, or that she's not even a foal at all. But, when her secret does come out, their reactions might surprise her.

Bon Bon's voice is funny, and that's about all that anypony who meets her notices, as her marefriend Lyra soon steals the spotlight with her explosive personality, strange obsessions, and curious beliefs. And why not? Bon Bon is, after all, a perfectly ordinary, boring pony in every way but two: her voice, and the carefully kept secret that she isn't really a pony.

(Edit:) Now with an annotated version, courtesy of the incomparable Shoggoth Lord!