First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

Set in the far future after Celestia and Luna mysteriously vanished and the sun and moon froze in the sky, Antipodes is the story of two ponies thrust out into the harsh new world on an adventure to uncover what happened to the world so long ago.

(I wrote this when I was 17. it's pretty rough in places, but i think the basic ideas i had here were pretty cool. it's got a good skeleton)

Spanish translation here: https://www.deviantart.com/spaniard-kiwi/art/Antipodas-1-3-953524835

This story is a sequel to Too Shy for a Rainbow

If you liked this fic, check out the awesome Audio Dub version of it by The Lost Narrator!:
https://www.youtube.com/playlist?list=PLnqCBZacYIwK0xcHv85Lke-xFf5V9p7R4

It's been a month since Fluttershy and Rainbow Dash started dating. Everything was going fine until Fluttershy started experiencing horrific nightmares that started keeping her up at night. Looking for answers, Rainbow Dash, Fluttershy and Pinkie Pie seek out Twilight. But when the three mares find themselves within the world of Silent Ponyville, will things turn out for the better? Or will things end in tragedy?

Sequel: http://www.fimfiction.net/story/14866/Silent-Ponyville%3A-Reunion

The daily lives of the royal princesses, often times is pretty simple. Wake up, raise or lower their celestial bodies, hold court, meetings, sleep, and repeat. Oh, and dealing with their infuriating nephew! Overall, things aren't all that easy for them but it's manageable and mundane.

But when an innocent wish came true, both sisters are now facing a new Blueblood. One that can be considered better, yet for some reason, this version seems to have forgotten how magic works and keeps looking at the world like a newborn baby.

So what happens now? Did their wish actually come true? Is it some sort of act? Has he been replaced by a changeling? And what does this new Blueblood mean for Equestria?

Only one thing is for sure, shenanigans will appear and a lot of ponies are about to spit their coffee. Look out Equestria! There is a new Blueblood on the loose, and this one might actually be worthy of the title 'Prince'.

The 'Romance' tag is for events that happen later on the chapters

Commission by: https://www.deviantart.com/estefanoida/art/Masked-Man-Rotation-781069129

Editors
SirReal ( https://www.fimfiction.net/user/238433/SirReal )
Sipioc ( https://www.fimfiction.net/user/222170/Sipioc )
AvidSeason ( https://www.fimfiction.net/user/185717/AvidSeason )
RadBunny ( https://www.fimfiction.net/user/70640/RadBunny )
Brony_Falcon ( https://www.fimfiction.net/user/156110/Brony_Falcon )
YellowBastion ( https://www.fimfiction.net/user/61468/yellowbastion )
Brave Stomp ( https://www.fimfiction.net/user/55493/Brave+Stomp )
Arstotzka-Pon ( https://www.fimfiction.net/user/302802/Arstotzka-Pon )
FlashBoltMayhem ( https://www.fimfiction.net/user/118466/FlashBoltMayhem]FlashBoltMayhem)
Nocturnas (https://www.fimfiction.net/user/292418/Nocturnas)
Kit The Kite (https://www.fimfiction.net/user/29208/Kit+the+Kite)
Thank you so much for giving me a hand!
Initials in the chapter titles denotes who to thank/blame for the majority of the edits in that chapter.

Now with a Russian version!
Link: https://ficbook.net/readfic/8253964
By: Mariness

I made this out of curiosity and intrigue, so there is no need to take too seriously. This takes place during season 8 before Spike got his wings.

Rated ‘Teen’ for language, mild violence, and graphic depiction of cuddling. Ratings could change at any moment depending on how the story progresses.

A Metroid Crossover

A meteor, resistant to magical manipulation, crashes in Equestria, Planet Equis, and soon spreads an unknown poison throughout the land. Containment is all but failing and the Princesses have little power to stop the spread of the Great Poison. The Elements of Harmony are of little use as no knowledge exists of this threat that consumes all life. Help comes from a certain Hunter, clad in metal.

Samus Aran will not only fight for her life as always, but her own sanity as well as these ponies that she begrudgingly starts seeing as allies. New horrors and abilities await her as a reason to fight slowly festers within her, possibly unlocking something she had been denied for so long: Friendship.

Notes and Resources:

This takes place after Echoes. The events of Corruption will have not happened yet. In terms of MLP, consider everything up to and including the Crystal Empire. Princess Twilight does not exist here, etc. The official Metroid Timeline can be found here.

As well, this story references the manga in many places. Reading of it is not required and I try my best to explain the context, but if you're interested, both volumes can be found here.

EDIT: This story was written over two and a half years, beginning in 2013. You'll probably notice the difference in writing as the chapters progress.

This story is a sequel to Necromancy For Foals

Twilight Sparkle and Rainbow Dash find themselves drawn by the call of the cutie map to a jungle in the middle of nowhere. Drawn further by the knowledge of an ancient temple, they are confronted with icy cold and a sense of dread.

A Necromancer was sealed away in this temple a thousand years ago.

Now, he is waking up...

((Sequel to Necromancy for Foals. Artwork by The-Minuscule-Task on Tumblr.))

Long ago in a distant land, Ivo Robotnik, the egg-shaped master of science, unleashed an unspeakable evil. But a brave blue hedgehog wielding supersonic speed stepped forth to oppose him time and time again. Before their latest confrontation reached its climax, the villain tore open a portal through time and space, and flung him into another world where magic and fantasy are everyday reality. Now the hero seeks to return to his world, and stop the mad doctor from conquering this one too. Along the way he'll meet new friends, new enemies, and just maybe something a little more. All while the fate of two worlds hangs in the balance.

Hang on to your seats boys and girls, cause we're breaking down the walls between dimensions.

Now on TV Tropes.
Cover art by BroDogz.
Sonic the Hedgehog universe, set directly after Sonic Generations.
MLP universe, set just before the end of Season 2.

Edited by, Jet Storm, Typoglyphic, Bok, and RobKuro85.

After some inspiration from from my good pal Gunflame, I'm throwing my hat into the ring for a good Sonic/MLP crossover. And I aim to give it the much needed improvement in quality that's so desperately needed with this particular crossover genre. I'll strive to make this one of the premier Sonic/MLP crossover stories on the web.

Thank you and enjoy.

Featured: 3/3/22, 6/18/23, 6/26/23, 1/1/24, 1/27/24, 3/14/2024

Set only a week after the banishment of Princess Luna to the moon, the realm of Equestria is in a state of upheaval. Celestia's royal guard attempt to regain control over the vast empire once ruled by dual monarchs, and the young alicorn's actions as a ruler have become a subject of scrutiny after her sister's attempted coup. Two factions have risen in the turmoil: The Knights of the Sun and The Bright Moon.

Far away from the political infighting and sword rattling exists a small mining town on the outskirts of Equestrian territory. Where once the royal guard would have no trouble fending off raids from bandits or other criminals, the panic of the capitol has caused a withdrawal of military forces to more essential cities and trading ports. Completely undefended and without a spell or sword amongst them, this town was soon overrun by a band of bi-pedal canines calling themselves the Diamond Dogs. As brutal as they are lazy, the Diamond Dogs have forced the local population to work until collapse to collect gems from the town mine.

Outraged by his inability to fend off these bandits and thieves, a young unicorn named Bone Marrow tries with all of his might to find his purpose in life - his cutie mark - and hopes that it will be enough to drive off the invaders of his home. He will soon discover that his special talent is far more than he bargained for.

((A Sequel will begin for this story as soon as I finish I Am a Pet Changeling. Stay tuned on Discord! https://discord.gg/nDXd3AB ))