Please do check out the Reading List by Lance Omikron to navigate the Amalgam Universe most clearly

A massive war of titanic forces is taking place in the Kaiju's world. However, when two faction's leaders, the current Godzilla and his 'brother' Xenilla duke it out; humanity unleashes its most devastating weapon. Something beyond comprehension occurred and the boundary that divides worlds, if only for the briefest of moments, was torn to shreds. New forms are taken, new bodies assumed. But old hatreds die hard. But how well can hatreds continue in the world of love and tolerance? Especially with its own demons follow it there?

Godzilla Franchise by Toho Company Ltd.
My Little Pony is owned by Hasbro Studios.
This is a non profit fan-work and I claim no ownership on the IP itself.
Story created by Tarbtano
Co-created and Contributed by Faith-Wolff and Skylark8756

HOLY SHEETZU WE GOT FEATURED! THANKS GUYS!
6/27/2014
Now on TV tropes (Thanks Raidrik, VampyGirl; Lance Omikron, Ultimomant, and ZimFan!)

Kaiju Cast:

Godzilla a.k.a Gojira
Xenilla
Mothra
Anguirus
Rodan
Destroyah

[Character copyright of Toho and Daiei Company, artwork property of Matt Frank]

(for any G-fans, Xenilla is the kaiju you may know as Spacegodzilla. I changed the name because I got quirked about typing it repeatedly and am writing the story so it can at least be understood by just an MLP or just a G-fan; and thought it get very confusing that one character's name was just another character's name with an adjective. Also... don't pretend it's the most imaginative name Toho has every made)

An accident in the lab sends our favorite boy genius to Equestria, as a pony. What will he do and how will he get back? The answer: Science! (Cover Art Updated!)
New FAQ! and TV Tropes!
Planned Phrases from Dexter:
“Pinkie Pie! Don’t push that Button!” /to Pinkie
“Please, Magic is the word simpletons and the ignorant use to describe what they cannot understand.”/ to Twilight
“No, I didn't strap a rocket to you. I strapped you to a rocket.” /to Rainbow Dash
“Friends? Who needs friends?”

Dexter is a boy super-genius with a disdain for anything girlish and no desire for friendship. After an mishap in his lab, he gets stuck in Equestria. How will he cope with the over-friendly ponies, and the girlish everything?
For any who do not know Dexter's Lab: http://en.wikipedia.org/wiki/Dexter's_Laboratory
[RIP Christine Cavanaugh: 8/16/63-12/22/2014] - Dexter's Original Voice Actress

20-year-old Ryan Burbank is living with his girlfriend in their woodland home when he is struck by a mysterious infection seemingly out of nowhere. To everyone's horror, his sickness spreads quickly throughout his body, shutting him down one piece at a time. The doctors are at a loss of what to do about this new form of bacteria. Ryan and his loved ones choose to keep fighting until either a cure can be discovered...or the pain becomes too much.
At the height of his suffering, he discovers a happy little show while watching television in his hospital room. The bright colors and happy attitudes of the cartoon equines provide him with a much-needed escape from the daily pain of being killed from the inside.
Eventually, the pain becomes too much and he decides it would be better to go out surrounded by his family, in the embrace of those who kept him company throughout his short life. Just as he starts to fade, his eyes wander to the screen of the hospital room television and the cartoon ponies who adorn it. Something strange begins to occur...almost like the screen is pulling him in. Tunnel vision, maybe?
No, that can't be it...why can he hear his name being called by a very familiar voice? And why is she...crying? Who is this crying, familiar voice and why does she seem to know him?

[img]https://orig10.deviantart.net/bf87/f/2014/010/3/0/recup_pinkie_sphear_1_2__by_xdrawdex-d71pigr.gif[/img]

SPOILERS IN THE COMMENTS

Rated "Teen" for language and the "Sex" tag is for all of the sexual humor and suggestive situations. If I decide to up the suggestive stuff in the future, I'll change the tags and rating to fit that change.

Cover by enamis.

When Andrew wakes up in Equestria, he makes a rather large impact. Well, as large an a impact as a normal 20 something guy falling from about 20000 feet can make. Will he make friends in this strange but oddly familiar world? Or will the absence of his sister drive him closer to the edge? Strange things are happening in Equestria, will Andrew be able survive being at the center of them all?

This is my first story, so constructive criticism is always welcome.

I'm pleased to reveal the new cover art, done by the extremely talented Shadow Beam!
(Here's his Deviantart! http://lshadowbeaml.deviantart.com/ )

Editors: Fire Starter, Alcatraz, and Neko Majin C (Recently: Seven Fates)
Additional Story tags: Clarke's 3 Laws (More specifically 1 & 3)
Cover Artist: PosionSt

In the year 2036 an asteroid dubbed "Apophis" struck the Earth and contaminated fifty percent of its water and atmosphere with an extraterrestrial pathogen dubbed "The SOL Strain." After two years, sixty percent of all human life was gone! With the world's governments struggling to keep their countries together; all seemed lost.

That is where my story begins.

My name is Chloe Cooper and I'm the only known human to be genetically immune to the SOL Virus. During the pandemic, I volunteered myself for experimentation. In order to keep me safe, I and three other humans were locked away in a vault deep within the Appalachian mountains. There these people, who I soon considered my friends, ran many tests on me and the virus, however after months without contact from above it was time to put the project to rest.

Cryostasis pods dubbed: "Cocoons" had been built in case we failed. 16,000 years later I awoke to sirens, signaling a whole host of problems.

And now? I'm the last of my kind.

Character tags will be updated depending on where the story goes

This story is a sequel to Stardust

Times are changing for Equestria as Twilight’s return brings with it news of people and cultures from beyond the peaceful world everypony knows. Aid and volunteers are freely offered to help the besieged humans of Earth because every Equestrian knows that’s what good friends do. Unfortunately, making friends can also have the unintended consequence of making enemies.

When the monsters besieging the humans strike at Equestria with a level of brutality not seen in over a thousand years, the cry for help is sent to all the kingdoms of the world. Honored allies step forth to fulfill ancient treaties and oaths. Enemies, old and new, bury their grievances. An alliance never before seen in Equestria will be created to combat the monsters from the void.

And because of these events, a grim but welcome sibling to the XCOM project is born.

(XCOM/FiM Crossover)
(Sequel to Stardust, which I recommend reading before starting this. Fortitude Amicitia and Broken aren't required reading but are supplemental to the storyline)
(Gore tag for blood and violence)
(Alternate Universe tag because of the divergence from canon that Stardust has caused)
(Uses elements of Season 4)
(Coverart produced by the amazing Carnelian!)
(Many thanks to Arzoo, BradTheBrony, Vandenbz and Setokaiva for prereading!)
(As of 03/07/2016, the prereading team consists of Arzoo, BradTheBrony, Noble Cause and Metallusionsismagic!)
(Complete with it's own TVTropes page as part of the Stardust continuity. Could use some updating!)
(Character tags will be added as chapters are added!)
(Featured 5/12/2014! Thanks folks!)
(Possible spoilers in the comments! BEWARE!)

Let me tell you a story about the bad place.

Special thanks to Vimbert and Noble Jury.

Until yesterday, my life was no different than anybody's. Go to work, pay the bills, sleep. Today, I woke up to a world without humans. The streets are empty, the power grid is running down, and not another soul is in sight. That might not be the worst thing, if I wasn't also a pony.

Where is everyone? Why is this happening to me?

Will l stay sane long enough to starve?

This story now has a hardcover! If you'd like one of your own, you can grab it here: https://starscribe.net/

Now with a TVTropes page! Для тех, кто предпочитает русский язык, перевод можно найти по ссылке.

Note To E-Reader users: This story contains illustrations in each chapter, which will be lost in the standard fimfiction chapter export. The generous Phoen1x took the time to produce an epub version with all the illustrations intact, which you can download here.

A huge thanks to Zutcha for all his hard work on the art of this story. Also a huge thanks to my editors Two Bit and Sparktail, for tolerating my half-written crap.

There are 100 billion stars in the Milky Way, and humanity is determined to explore every one. We send probes, probes with the blueprints to reproduce human explorers upon arrival. Uninhabited worlds the galaxy over can be colonized and populated, until after many years they too can join the vast throng of interstellar civilization. But if a probe is very, very lucky, it will land on a populated world instead. Equestria is one such world.

Even so, it's far from perfect for colonization, not with an environment lethal to human life. But each probe is resourceful and armed with the greatest machine intelligence mankind has devised. If placing a human mind into a newly manufactured human body won't work, it will just have to get a little more creative.

This book has a Hardcover! If you want to pick it up, you can grab it here: https://starscribe.net/

This story was written at the behest of Canary In The Coal Mine, who is sponsoring it on my Patreon. As usual, cover by Zutcha. Editing by Two Bit and Sparktail.

Fantastic prereading help from: Chyre, Danger Noodle, Doctor Disco, and Doggyshakespeare (who also did the Esperanto translation). Thank you all for helping to make this story more readable and more consistent for everyone.