A Metroid Crossover

A meteor, resistant to magical manipulation, crashes in Equestria, Planet Equis, and soon spreads an unknown poison throughout the land. Containment is all but failing and the Princesses have little power to stop the spread of the Great Poison. The Elements of Harmony are of little use as no knowledge exists of this threat that consumes all life. Help comes from a certain Hunter, clad in metal.

Samus Aran will not only fight for her life as always, but her own sanity as well as these ponies that she begrudgingly starts seeing as allies. New horrors and abilities await her as a reason to fight slowly festers within her, possibly unlocking something she had been denied for so long: Friendship.

Notes and Resources:

This takes place after Echoes. The events of Corruption will have not happened yet. In terms of MLP, consider everything up to and including the Crystal Empire. Princess Twilight does not exist here, etc. The official Metroid Timeline can be found here.

As well, this story references the manga in many places. Reading of it is not required and I try my best to explain the context, but if you're interested, both volumes can be found here.

EDIT: This story was written over two and a half years, beginning in 2013. You'll probably notice the difference in writing as the chapters progress.

This story is a sequel to A Pony out of Place

Set directly after A Pony out of Place. Flare Blitz, a Rapidash, turned pony, has opted to stay in Equestria, but things won't be so easy for him. Now a full-fledged pony, he has to earn a Cutie Mark, train with the Princesses, survive a love triangle and Arceus knows what else.

And most importantly... get Twilight to go out with him!

It has a TV Tropes pages too, check it out and help add to it.

When Dialga and Palkia start to attack one another in Alamos Town, a Ponyta named Flare Blitz is caught in the crossfire. After falling into the dimensional rift, he finds himself in a strange new land filled with brightly coloured ponies. Flare doesn't know how he got here or if he can even get back home...

The question is, will he even want to go home?

Edit: So I finally got offa mah flank and started the re-write. I want to give massive props to Blazinblade7 for editing as well as my little bro, who is teaching me a great deal of authory stuff.

You can find the TV Tropes page here!

This story is a sequel to Better Living Through Science and Ponies

THIS STORY IS CURRENTLY BEING REWRITTEN. PLEASE READ:
I've decided to rewrite this entire story. Considering that I began this project with almost no creative writing experience, I was bound to make some pretty bad mistakes. The story flow is not well organized, and there is an unhealthy amount of redundancy and poor pacing, as well as some pretty important things that I should have included. I intend to address these issues to the best of my ability, but it will be a long and arduous task. This story means a lot to me, so I want it to be more than the mere amateur mediocrity that it resembles. So, give it a read if you want, but keep in mind that it will change. I recommend that you put this on your read later list in the meantime.

This is a Portal 2 crossover. If you haven't played Portal 2, please do that first. Then read the prequel if you haven't done that either.

After Chell finally escaped the confines of Aperture Science, a freak portal mishap down below transported her, along with the entire Enrichment Center, to the land of Equestria. Upon entering this world, she was transformed into a pony. In a strange body and in a strange land, Chell was fortunate enough to be accepted by the ponies of Ponyville, and she lived out a new life contently among the ponies.

But that peace was not to last, for GLaDOS took a particular interest in the ponies of Equestria, and after two weeks of preparation, she launched a surprise attack and kidnapped 300 ponies to serve as test subjects, including Chell's friends and the princesses themselves. Once GLaDOS had them, she subjected them psychological torture. To save her friends, Chell made her way into the one place she hoped never to see again. In doing so, she freed the ponies, defeated GLaDOS in battle, and helped bring about the destruction of the facility. Although this made Chell a hero, she paid a terrible price in that brutal fight.

Beaten, battered, and traumatized, Chell spent months recovering from her wounds. After returning home from the hospital, all she wants is to once again live a normal life in Ponyville, but to do that, she must first heal from her wounds, both physical and psychological.

At the same time, GLaDOS herself has survived Aperture's destruction. With nothing left but herself, she vows to get back to testing. Though she faces an uphill climb, she is determined to see her facility rebuilt and the testing resume, and will stop at nothing to achieve this.

Has a TV Tropes page (will need to be updated after rewrite)

The works that this fanfiction is based on are properties of Hasbro and Valve. I would like to thank Pen Stroke for writing the original story and Flyer for his assistance and advice.

Please note, this is an unofficial sequel. I have received permission from Pen Stroke, but it is not canon to the original. I hope you enjoy it, but keep in mind that this is a fan work (of a fan work), and Pen Stroke holds the rights to the original story.

==Originally written spring 2011== Equestria Daily Post==
GLaDOS is free of Chell, free to continue testing, when she discovers a portal gun Wheatley tried to repair with duct tape. When the portal gun catastrophically fails, the enrichment center, GLaDOS, and Chell are literally dropped in the middle of Equestria. The mute test subject soon finds the world of ponies far more welcoming than the human world. But GLaDOS sees possibilities. Let the testing begin... for science.

This is the first book of The Humanity Within Trilogy. Its sequel is What I've Done.

I wasn't always like this, a monster, running through the woods on an alien planet. I was once a man. I had dreams, a girlfriend, and a great job.
Then They came. In the middle of the night, They scooped me from my home, and... changed me.

Now I'm a beast, a demon the like of which the world I've become stranded on has never seen before, scraping by on the fringes of society, hiding from the natives, and doing my best to avoid notice.

After all, who could ever be friends with a monster?

Cover Image done by the very talented PaintSplotch! You can find his FimFic account here.
And here is his DeviantArt Account!
Now 100% approved by Twilight's Library!
Mad props to my prereaders:
ThatPonyWithASword.
Admiral Applejack.
JXWheeler

Twilight and the other Elements of Harmony have saved the land of Equestria from Nightmare Moon, Discord, and the Changeling army, but now they face perhaps their biggest challenge yet. A challenge that lurks behind smiling faces and friendly eyes. A challenge that threatens to overtake the entirety of Equestria and enslave its inhabitants. But the ponies won’t face this threat alone. Help comes in the form of the most unlikely of companions: four teenagers, a hawk, and a blue centaur.

Luna's return was met with significant fanfare, though with all the fuss dying down, and with the formal re-establishment of the night court months away, Luna seems to have had little to do other than lounging around.

or so Celestia thinks.

When she finds Luna entering the Ministry of Records unannounced she wonders, Just what is her little sister up to?

Edit: WOOO! Featured on June 2, 2015 (at least in my country's timezone i think) Thanks to everyone!

When the guards find a foal crying in the city streets, they bring him to Celestia's attention. Soon after, It becomes apparent he has fallen through every crack in Equestria's society. Feeling she has failed the colt, Celestia takes him into her own home.

Special thanks to my editors: ersmiller and Rinnaul and to my comrades in crazy ideas Exelzior and BionicBrony.

Strange nightmares are plaguing the ponies of Equestria.

Somepony must help ponies to face their deepest fears, but unless Princess Luna is able to discover who—or what—is responsible, the nightmares may never end.

Scootaloo is ready to prove that she can be as fearless as her big sister, Rainbow Dash, even if it means never having a peaceful night's sleep again.