Naruko (Female Naruto) thought she knew a bit about these bonds the Hokage always talked about. However when she tries a mysterious Jutsu she is sent to a new land. In this new land, she will come to learn the truth about friendship and bonds, and at the same time realize she had no idea about such things before in her life.

She will learn a lot from this land and make friends while she and the others go on adventures and learn more about Equestria's past in the process. She and Twilight will also learn of a threat which puts all of Equestria in danger. Naruko will do all she can with the others to save their home, but what of Konoha? Will she return there? Will she even ever want to go back? This will have to be seen as the story unfolds.

Naruto and My Little Pony crossover.

Sequel to Aperture in my Heart. Chell is lost, and it is up to the ponies to make sure she returns home. However, between Chell and home stands an angry, all-powerful AI, test chambers, and lemons. A ton of lemons.

But no one, not even Space and Wheatley, knows what is waiting for them deep in the bowels of Aperture....

After a sith turned Jedi is given an assignment to keep the separatists from invading a peaceful system, and his ship crashes on the planet, will he be prepared for what kind of people, or rather, Ponies he will meet?

In the aftermath of a huge explosion in the Everfree Forest, Ponyville soon finds itself as the new home for Lucario, an "Aura Pokemon" from another dimension. While he avoids explaining what has happened to him and where he came from, he repays his new friends' kindness by protecting them from the evil forces that suddenly appears around Equestria.

Meanwhile, a certain princess of the night watches his every move, unable to judge if this new visitor will bring safety or utter destruction upon the land.

(This story primarily takes place between season 2 and season 3. Elements from season 3 and beyond may occur, but won't have a significant impact on the plot.)

After a mishap in a magic duel, the ponies are transported to the Team Fortress universe. They'll take the classes places while The Engineer tries to find a way to get them home.

Feeling restless at the dragon temple, the purple dragon of legend decides to take a leisurely flight one night. That all changes when a freak storm sends Spyro tumbling through a vortex and finds himself in a rather colorful new world.

A One Piece / My Little Pony: Friendship is Magic Crossover.
This story, is a re-telling of the G1 MLP pilot episode "Rescue at Midnight Castle" with G4 ponies, several G1 MLP villains not in the original pilot, and Tony Tony Chopper from One Piece replacing Megan's role.
Takes place after the royal wedding, and before Season 3 for MLP
Also takes place after the Straw Hat's Fishman Island adventure, but before reaching Punk Hazard.
(Warning, some light Chopper X Fluttershy crossover shipping)

During one of the Straw Hat Pirate's voyages after the events of Fishman Island, a storm of the New World strikes their ship, The Thousand Sunny, and sweeps Tony Tony Chopper, the crew's reindeer doctor, overboard. He later awakens in the cottage of a yellow winged pony named Fluttershy who rescued him. Chopper discovers he's in a land called Equestria.
Little do any of the know, ancient evils long forgotten over time, threaten to plunge the land into darkness.

One Piece X MLP Crossover

A emergency trip to Zecora's leads Fluttershy to find a strange pony with a straw hat. Unfortunately, he scares Fluttershy off with his talk of eating other animals. The strange pony's arrival in Equestria sets off a chain of events that threaten plunge the peaceful kingdom into an all out war. Twilight and her friends, along with the new pony may be the only ones who can unravel the mysteries that surround Equestria and save it from falling apart.

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New Cover Art by Droll3