Part 1: Lyra's Pyro Predicament
Part 2: Twilight's Demoman Devastation
Part 3: King Sombra's Robotic Retaliation

King Sombra was soundly defeated by Princess Cadance and Shining Armor almost a year ago, and the Crystal Empire was free. Now, after a teleportation mishap, a lone Engineer from Gray Mann's massive robotic army has found itself in the mountains just on the border of the Empire with one task in mind: complete the experimental Lvl. 4 Teleporter and bring the robotic forces to Equestria...but what other dark forces might be laying dormant in those caves?

Hello there. My name's James, and I'm a Metagross.

Yes. A Metagross. As in, the Pokemon.

Myself and five other acquaintances with varying degrees of friendship appeared here in Equestria quite some time ago, having all been transformed into Pokemon for some hereto unknown reason. The process of our reuniting was difficult, and we didn't get a happy ending, but we went our separate ways as friends brought together through extenuating circumstances.

Now, after being woken up from my oh-so comfortable hibernation by one of Princess Celestia's messengers, I find out that there's new, terrifying creatures terrorizing Equestria and even some of the lands beyond. By some of their descriptions, I have an inkling of what they might be.

Guess who's put in charge of cleaning up the mess.

Sigh.

Time to get the gang back together again.

This is a direct sequel to the story A Pokemon Problem. It is highly recommended, albeit not necessary to read that in order to understand this story.

Will write for a better cover image!

I'm all alone in Ponyville now. My best friends have moved on to greater things. I'm not exactly the pony I used to be, either. I don't really like anypony anymore, and nopony likes me.
I don't even smile anymore.

(I didn't make the cover art, that's all you need to know. I'm just giving credit now to the guy who made it.)

Well, it appears that me and a bunch of people with varying degrees of friendship with yours truly have been --somehow-- teleported to the one place I never thought I'd see.

Or maybe we were trans-mutated. Transmogrified?

Never mind.

Now, I've got to find the other five people that had to have been thrown in here as well, all the while having to relearn even the most basic bodily functions and commands.

Fun.

Oh, and did I tell you the best part?

We're all Pokémon. Yep, as if being tossed on your rear into an alien world as a strange creature wasn't enough, now we've got to deal with the fact that no one in Equestria knows what the heck we are.

I can feel a headache coming on already.

Click here to read the sequel, A Legendary Issue!

Rainbow's hopes for a nice day off are dashed when she is awakened by a loud explosion, and goes to investigate, little did she know she and everypony in Equestria would find themselves caught up in a strange tale about invaders from another time, a dark and vengeful entity's return, and the means to stop him...

Earthbound/Mother 2, Equestria style! I know it's been done a few times before, but I thought I'd give it a try. A couple events are altered, added, and a few changed around, so that it can fit the characters and setting more rather then be a ponified walkthrough.

Now has a sequel!

Luna has gone missing and a dark power is rising, or at least according to Celestia. Desperate to put the evil to rest, but unable to remove herself from her work, she sends Twilight to where she believes the source is: a restaurant in the middle of Canterlot. Twilight thinks that it will be no problem... until she lands in a crazy place where yes is no and no is yes and is trapped.
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Earthbound crossover - that means it's trippy as all hell, kids. Also, do not read if you have a fear of the Boogey Tent.

In the year 20XX, brilliant scientist in the field of robotics, Doctor Light, has created a robot that can feel and think like a normal pony. This robot's name is Rock. But when evil forces threaten Equestria, Rock steps up to be converted into Mega Stallion. Unsure of his new powers, can he rise up as a hero Equestria really needs?

Or will he game over?

Equestria is barely three years old, and already danger threatens the fragile peace forged between the pony tribes. Monsters stream out of the Forest Ever Free on a daily basis, and now a prophetic dream foretells of even greater chaos that will befall the land.

It's up to Star Swirl the Bearded and his team of manly, heroic, eminently bearded (and strangely familiar!) stallions to brave the dark and murky Forest Ever Free in search of their one hope for salvation. Along the way, they'll learn more about the history of the land they've claimed as their own, not to mention each other. But as their unintended friendships grow, the forest will try its best to drive them apart.

Can they withstand the epic trials before them? Can they save Equestria? Will Star Swirl be known forevermore as the creator of Equestria's first beard-restoring spell? Journey a thousand years into the past and discover Equestria's epicest, beardiest history lesson ever!

Story tagged Dark for increasingly epic violence. Cover art by M. D. Quill! Accepted by The Royal Guard!

Note: This was originally written between Seasons 1 and 2, and may ignore conflicting lore established by Season 2 or later. THIS IS REALLY OLD WHY ARE YOU STILL READING THIS

Twilight Sparkle and her friends are snowed into the library one evening, and they happen upon that rarest of specimens - a book Twilight doesn't recognise. However, the ancient tale of adventure and intrigue they find inside ends up shattering their worldview and sending them on an adventure of their own.

This is basically what came to my mind when I heard that Lauren Faust's original concept for the show was of a more arc-based, magical girl style (this turned out not to be true, but my mind ran with it anyway), but this story ended up a long way from magical girls and well into high fantasy by the time I started writing. Also draws on select Homestuck and Dungeons & Dragons themes, and plays with a lot of things the canon leaves unexplained.

Tag update: Reduced character tags to Mane 6, CMC, Twilight Sparkle and Rainbow Dash. While the Mane 6 and CMC provide most of the ensemble cast, Twilight Sparkle and Rainbow Dash are the primary viewpoint characters.

Additional Tags: Anthro, conspiracy, high fantasy, gryphons, war.

Sequel now posted!

Equestria's origins are long forgotten, as well as its most powerful weapon, but when three stallions, unknown even to Princess Celestia appear in the middle of an elite forces camp questions are raised. One, the earth pony, appears to be silent, but his sheer size and strength speak for him enough, another, a unicorn, seems to be quite laid back and pretty self-centered, but he can hold his own with powerful magic that rivals and possibly surpasses the combat skill of Captain Shining Armor, finally the third, a pegasus, apperently the oldest and leader of the three remembers something about his past, more in particular, somepony. Follow the three on a journey that will tell them who they were, where they will be going and finally who they were really meant to be.
Starting with a prologue that goes over a lot of things and explains enough to you so you don't get lost in the actual story.
Alternate Universe tag because it follows the canon story line of events all the way until 'Magical Mystery Cure' No Twilicorn.
Cover art done by good friend of mine on DA... Thinkerten, check his stuff out, he'd really good.