Arceus has been imprisoned for many millennia, and in that time he has watched his world fall apart. But once he is finally freed from his prison he decides that to protect his Pokémon, and his family, that he will move the Pokémon, and a few select 'humans' to a world where they might live in peace, Equestria. However, not everyone on this new world shares his view of peace and the very presence of the Pokémon upsests some of the citizens of the world, even some of the ones he brought with aren't too happy with the situation. But a god's will is a strong thing and without his willingness the Pokémon and the citizens of Equestria are going to have to learn to get along, or at least tolerate each other. And there's a slight problem with some of the humans too, well, former humans that is.

Big thanks to tdnpony for proof reading, editing, helping me with ideas, and so much more.

Just a few of the side stories from my growing collection.
Pokemon, A Whole 'New' Frontier
A New World, A New Way-Swarm.
The City is Always Bustling On the Other Side
A Brave New World
A new World, Burning an Old Way

The rest can be found here, in my Fan Group. Group Linky.

Big thanks toxBUBBA1995x for the amazing new cover art!

I also have a Tvtrope page that is kept somewhat up to date by Kingofsouls if you know how to Trope, and want to help set it up, go here Tvtrope Link.

Since a lot of people keep aking this I'm gonna put an explanation here. I'm not following any one canon-verse here, I'm making a hodge podge universe with bits from the Manga, Anime, Games, and Movies, as well as some etcetera concerning issues addressed in none of them to great lengths. (Arceus' power is far beyond what he has in the games or movie and this does contain some Pokephilia, which comes from pretty much no canon material ever.)

Curious about Five Score? Come check out the story that inspired dozens of side fics and been enjoyed by bronies for years!

Original Synopsis Even though MLP:FiM ended a few years ago, my friends and I still loved the show. Stories, merch, fan art, I loved it all. Things started to get a weird though when I found myself with a cutie mark appearing on my leg. Humans aren't supposed to get cutie marks, so where the heck did this come from? And what's going on with my hair?

More Detailed Synopsis: Five Score is an action/adventure story of the human-to-pony transformation genre. It’s unique from most transformation stories because the transformation itself is not really the point of the story. It’s the inciting incident that raises countless challenges that must be resolved. They are on earth, as a pony, and need to fix this before things get worse. Think about yourself in their hooves for a moment. How are you supposed to change back or even figure out what caused it in the first place? How are you supposed to get food or do anything on Earth without being spotted by humans? If you are spotted or captured, how would you escape? How does one even open a door with hooves!? Did anyone else on Earth get changed as well? How could you get the word out to the other ponies who are themselves hiding? Is it worth risking travel across the country to reach the others? Which of your friends would you trust to help you deal with this? And why did you turn into this particular pony? Surely it wasn’t random chance, right?

These challenges are the tip of the iceberg in this full length adventure novel There’s a lot of humor, many tense scenes, and hell maybe even a war.

But don’t just take it from me, Look what random people on the internet are saying about Five Score, Divided by Four

One of the best things to come out of this fandom.
-IrraticDrop

This made me change how I think about fictional worlds, imagination, and creativity
-relgukxilef

The only story on FimFiction to have me literally shaking with excitement.
-jeramiahsental

SWEET FILLY LUNA I AM FLIPPING MY SHIT RIGHT NOW
-Shadow Reaper

Five Score master editor:
Scrub

Five Score proofreaders:
Comrade Sparkle
Rustle my Jimmies

Inexperience is a foreign concept to Celestia. At least she thinks it is. Right up until the moment a rash decision leaves her with a student who is a dozen years younger than what she's used to.

Enjoy.

For almost a thousand years, the immortal Nightmare Moon has reigned over Equestria as Empress. To the average pony, Nightmare Moon is an overarching enigma whose rule is absolute and whose wrath is terrible. But to Twilight Sparkle, who as an orphan has never known her parents, the Empress is something else entirely. When the young unicorn is brought under the royal wing as an apprentice, she learns a great deal more about the supposed tyrant than she ever knew. But as Twilight is introduced to life with her new mentor, she is thrust into a world of political intrigue, conspiracies and secrets. Secrets that were never meant to be revealed. As allies and enemies plot against the very peace of the nation, will Twilight fall prey to the perils of her new position? Or will she prosper and find in Nightmare Moon the mother she never had?

============

My eternal gratitude to my editor, LordOfTheWrongs, without whom Night's Favoured Child would not be the story it is today.

Now with added TVtropes!

Two hundred years. That's how long it's been since Discord was freed, how long it's been since he agreed to spread his power across Equestria to help preserve the Balance. At least, that's how the legend goes. Nopony believes in Discord anymore. He's just a myth, a fable meant to scare fillies and colts to sleep at night. A metaphor for the terrifying prospect of war.

Of course, that's how he likes it. It makes his job a lot easier, and his sales go a lot farther. Anything under the sun, be it love, or money, or fame, or eternal life, it can be bought at cost. And there is always a cost. And the good Doctor, as he is now known, will be more than happy to sell it to you.

So, step into this small town with us, see what deals can be made, and remember to always read the fine print. After all, the good Doctor will always give you what you want. But you should be careful what you wish for.

This follows the events described in the Cutie Mark Chronicles, with one small change: The Sonic Rainboom doesn't happen like it was supposed to. Six destinies fail to start. But when one door closes, another one opens.

Cover Art by Inspired_Light

This is supposed to be close to Canon, but since history is altered and the characters don't experience many of the events that make them who they are in the show I'm listing this as alternate universe (does that make sense?)
For the same reason I'm listing the OC tag, even though the OCs are the mane 6 living different lives.

Nopony dies, nopony suffers permanent psychological scarring, and no irrational whirlwind romances happen.
If I have inadvertently included somepony's OC I apologize.

Warning: contents may contain Existentialism. The facility used also handles peanut based products and wheat gluten.

For almost a year now, Trixie has been sending letters to Twilight. The only problem is, Twilight hasn't gotten a single one... until today. But now that she has, Twilight is left with more questions than she knows how to answer. Fortunately, she has a plan. Unfortunately, she doesn't know if that plan will work.

Featured on Equestria Daily
Reading by: WhoLandon
Reading by: PonyFicsOutLoud

Rarity's family name is in shambles, and her fortune is nonexistent. To return what her father squandered, she and her good friend Pinkie Pie turn to piracy, commandeering a magical airship and kidnapping the princess's personal student.

When Princess Celestia learns of Twilight and Applejack's abduction, she doesn't agree to pay the ransom. No, she hires the sky's greatest tactical mind, the Daring Swordspony Rainbow Dash, and her sidekick, Fluttershy. As the two groups engage in a game of cat and mouse, more dangerous threats hang on the horizon. Aztec Curses, angry gods, and a mysterious figure known only as the Derp Pirate Roberts.

Will the six Elements of Harmony be able to gather the seven pieces of eight, or will the world fall to utter chaos, and rise up as an empire of anarchy and piracy?

Now with its own TV Tropes page thanks to Cleverpun: TV Tropes

While experimenting, Twilight's new teleportation spell goes awry, sending her careening into a different world, just in time to take part in a fantastic ritual called Heaven's Feel. Twilight must adapt to the world of humans and take part in the vicious conflict that is the 4th Holy Grail War as a Servant alongside her equally reluctant Master. The duo must contend with powerful adversaries and survive the subtle machinations of the Magi determined to win the Grail at any cost. Can Twilight overcome her unwillingness to take the lives of others? More importantly, should she? And is there any way for the displaced Unicorn to return home? Trapped, alone and in a different world and surrounded by enemies on all sides, does the Magic of Friendship still hold any hope for Twilight?

A crossover with Fate/Zero.

This story is a sequel to Better Living Through Science and Ponies

THIS STORY IS CURRENTLY BEING REWRITTEN. PLEASE READ:
I've decided to rewrite this entire story. Considering that I began this project with almost no creative writing experience, I was bound to make some pretty bad mistakes. The story flow is not well organized, and there is an unhealthy amount of redundancy and poor pacing, as well as some pretty important things that I should have included. I intend to address these issues to the best of my ability, but it will be a long and arduous task. This story means a lot to me, so I want it to be more than the mere amateur mediocrity that it resembles. So, give it a read if you want, but keep in mind that it will change. I recommend that you put this on your read later list in the meantime.

This is a Portal 2 crossover. If you haven't played Portal 2, please do that first. Then read the prequel if you haven't done that either.

After Chell finally escaped the confines of Aperture Science, a freak portal mishap down below transported her, along with the entire Enrichment Center, to the land of Equestria. Upon entering this world, she was transformed into a pony. In a strange body and in a strange land, Chell was fortunate enough to be accepted by the ponies of Ponyville, and she lived out a new life contently among the ponies.

But that peace was not to last, for GLaDOS took a particular interest in the ponies of Equestria, and after two weeks of preparation, she launched a surprise attack and kidnapped 300 ponies to serve as test subjects, including Chell's friends and the princesses themselves. Once GLaDOS had them, she subjected them psychological torture. To save her friends, Chell made her way into the one place she hoped never to see again. In doing so, she freed the ponies, defeated GLaDOS in battle, and helped bring about the destruction of the facility. Although this made Chell a hero, she paid a terrible price in that brutal fight.

Beaten, battered, and traumatized, Chell spent months recovering from her wounds. After returning home from the hospital, all she wants is to once again live a normal life in Ponyville, but to do that, she must first heal from her wounds, both physical and psychological.

At the same time, GLaDOS herself has survived Aperture's destruction. With nothing left but herself, she vows to get back to testing. Though she faces an uphill climb, she is determined to see her facility rebuilt and the testing resume, and will stop at nothing to achieve this.

Has a TV Tropes page (will need to be updated after rewrite)

The works that this fanfiction is based on are properties of Hasbro and Valve. I would like to thank Pen Stroke for writing the original story and Flyer for his assistance and advice.

Please note, this is an unofficial sequel. I have received permission from Pen Stroke, but it is not canon to the original. I hope you enjoy it, but keep in mind that this is a fan work (of a fan work), and Pen Stroke holds the rights to the original story.