This story is a sequel to Right

It's been a year since the changeling invasion of Canterlot, where Twilight Sparkle discovered Fluttershy's true nature. Since then, the shy pegasus has been more isolated than usual, scared of what may happen if anypony else were to find out what she truly was: a changeling raised by ponies since she was a foal.

After much poking and prodding from Twilight, she decides that she'll tell the other element of harmony bearers all at once. When her friends all arrive, and Fluttershy reveals her true form, the two find themselves under attack by their friends. Fluttershy and Twilight escape at the last moment, not entirely sure what just happened, and find themselves in a forest that neither pony recognizes, with no way of getting home that they can see.

They are totally alone. And totally lost.

Twilight decides to go out for a friendly night of drinking with her two friends, Pinkie Pie and Fluttershy, to relieve the stress of planning her brother's wedding and defending Canterlot against the changeling invasion, but not all is as it seems.

A letter arrives in the middle of the night, informing the unicorn that one of her two friends has been replaced by a changeling.

Brought to you by Loyal2Luna, this new Downloadable Content for Mass Effect 2 brings the fight to Equestria.

Just about ready to embark on their mission to stop the Collectors from further abducting human colonies, Commander Shepard and the crew of the Normandy SR-2 are given a new priority, when the Illusive Man tasks them with investigating the mysterious disappearance of a Cerberus science team.

Soon, what begins as a simple search-and-rescue unveils a mystery millions of years in the making, and the Commander finds himself thrust into a situation he couldn't possibly have prepared himself for.

Join the Hero of the Citadel as he uncovers the secrets, combats the demons, and ultimately decides the fate of the impossible world known as "Equestria."

It is the year 2038, and the Earth is slowly being consumed by a space-borne monstrosity dubbed the Black Tide, which is using nanotechnology to remake the planet into something hideously alien.

Erin Olsen works for Project Harmonics, humanity's last-ditch effort to find a new world before the Tide can wipe them out. But when that world is found, and it turns out to be occupied, Erin will need to find the courage to face the unknown in order to save the inhabitants of both worlds.

(Many thanks to Easteu for the fantastic cover image for this story!)

Now with its own TV Tropes page

There is now a follow-up to this story: Sunflower - Side Projects
Sequel: Project Sunflower: Harmony

The Doctor's adventures in Equestria continue in this second installment of the Doctor Whooves Series.

His nature as a Time Lord revealed to Twilight's friends, the Doctor prepares for his first jaunt into Equis' history with Rainbow Dash when Applejack informs him of something mysterious she saw as a filly. Intrigued, the Doctor and Twilight, accompanied by Applejack and Rainbow Dash, travel 3000 years into the past to visit Ancient Roan during the Reneighssance Period.

Upon arriving, the ponies are beside themselves with wonder as they explore a place they once thought existed only in history books. They even get to meet a living legend in the form of Leonard DiHoovsie: the famous inventor, thinker, painter, and philosopher. But not everything is at it seems, and something disturbing is happening just under the surface of Roan's exquisite architecture. With strange rumors abound, and a string of unexplained and unsolved disappearances plaguing the historic city, the Doctor's companions are about to discover that some things are left out of the history books for a reason.

"Game of Stones" is the second episode of the Doctor Whooves Series and the fourth of the expanded "Number 12" continuity begun by the inspirational Squeak-anon.

It is strongly recommended to read the following fics here on FIMFiction before proceeding with "Game of Stones."

1 - Number 12 by Squeak-anon
2 - Traveler by Squeak-anon
3 - The Pinkie Conundrum

Comments and critiques are very much desired and let this crazed writer know that the herd does indeed care.

Elements of Number 12 & Traveler: Squeak-anon
Doctor Whooves Intro posted on YouTube by: Cshep99
Cover art provided by FoxInShadow from deviantart.com
Proofreader, Editor and Number One Assistant: 2dextreem

Three girls. How did three girls manage to completely obliterate my understanding of the universe? Well, I guess I shouldn't call them girls (even though they look like they are), ponies would be the better description.

All I wanted was a nice breakfast and a chance to skip class. But the world decided to break on me instead, or maybe I broke it. I can't really make heads or tails of things anymore.

But what I do know is that I found three girls and they were scared. I can't believe I'm saying this, but I've got to help the Cutie Mark Crusaders get back home.

Part of the PonyFall Collaboration

Cover art by suirobo

Who is Scootaloo? Everypony knows about her present, but when it comes to her past there are as many different answers as there are questions.

Is she the love child of two star-crossed lovers? The last hope for the future? The child of a broken home? A mysterious figure fighting a war no pony knows about? Or is it something else entirely? Is she even a pony at all?

Twilight Sparkle decides to ask everypony in Ponyville and find out about Scootaloo...and the stories, rumors and gossip she gets will leave her wondering how the truth can ever compete with fiction.

My thanks to Page Turner for the new story cover!

Now has its own TVTropes Page!
http://tvtropes.org/pmwiki/pmwiki.php/FanFic/TheManySecretOriginsOfScootaloo

And has a featured page in the Non-Canon My Little Pony Funny Page!
http://tvtropes.org/pmwiki/pmwiki.php/Funny/TheManySecretOriginsOfScootaloo

Thanks to all my readers and fans for all the support and help I have gotten! I am truly touched.

==Originally written spring 2011== Equestria Daily Post==
GLaDOS is free of Chell, free to continue testing, when she discovers a portal gun Wheatley tried to repair with duct tape. When the portal gun catastrophically fails, the enrichment center, GLaDOS, and Chell are literally dropped in the middle of Equestria. The mute test subject soon finds the world of ponies far more welcoming than the human world. But GLaDOS sees possibilities. Let the testing begin... for science.

Pinkie Pie is overjoyed when she meets a Pegasus who seems almost exactly like her.
She's fun, silly, and Pinkie's friends take an immediate liking to her.
What could possibly go wrong?

Translated into Russian here!

The Cutie Mark Crusaders ask Rainbow Dash and Fluttershy about what happened just after the events of the Cutie Mark Chronicles; specifically, what happened to Fluttershy and Rainbow Dash immediately after the race. Reluctantly, Dash and Fluttershy delve into a tale. A tale of a young Fluttershy's amazement at the world she had landed upon, and a filly Dash's desperate quest to save her from that most evil of places: THE GROUND.