This story is a sequel to Metroid Equis

With the culmination of events on the BSL Research Station, Samus Aran is finally able to come back to Equestria, Planet Equis; to come back home. Much has changed in her absence, but it is still the friendly, peaceful, welcoming planet and nation that she left behind two and a half years prior. With the Space Pirate threat neutralized and the secret, illegal Metroid militarization programs destroyed, it appears that Samus can finally take another massive breather with her friends and enjoy some well-deserved rest, recovery, and relaxation. The galaxy is finally at peace.

At least... for a short while.

A new enemy, one much closer to home, soon rears its head, threatening all of Equestria and Equis with complete and utter annihilation. Their mission: revenge. Samus will fight with all of her being alongside her allies against an enemy who would like nothing more than to see all that she holds dear, including her home planet, completely razed. In so doing, her cunning, ever determined enemies unleash a weapon so unexpected, so eerily familiar yet horrifically foreign that even Samus herself just might prefer the late Ridley or the SA-X...

Editing Team: Random_Dragon; ToxiClay

The Metroid Timeline/Chronology (confirmed by Nintendo) can be found here.

Canon Considerations
MLP-FiM: Up to AND including "Magical Mystery Cure." (Seasons 1, 2, and 3)
Metroid Series: Everything up to AND including Metroid Fusion (Including original mangas. See official timeline above). So, effectively everything.

An interlude between Flammenwerfer's fics Metroid: Equis and its sequel, Metroid Equis II: Duality.

The war is over. Equis has survived the dual threats of Phazon and Space Pirate invasion. A new era of peace and prosperity covers the planet, as new trade routes between Equis and the Federation - centered in the country of Equestria - bring new technology and wealth to the nation, and the world.

But these thoughts are far from Fluttershy's mind. Her thoughts are focused on her friends - especially Samus, far distant from the world - her daily life, and her animals.

In particular, a new one... One she's never seen before. But she calls Fluttershy Mama, so of course she'll care for the little flying jellyfish, whatever she is.

What could go wrong?

Edit: It isn't required to read Metroid: Equis to enjoy this story...but it's highly recommended to read it anyway. It's a really good story.

What happens when 200 talking, cursing, and fighting spheres show up, asking to "gib clay," and "pay debts?" It's a ridiculous question, but that's just what happened what day...

A shameless, unoriginal ripoff of a similarly titled show.

Anonymous, Second Chair of the Court and local Canterlot human, doesn't take it too well when Twilight goes back on her word. With the help of his assistant, he plans to exact his revenge on the Princess.

When a human appears in Equestria and is considered a threat, he is forced to flee from everything in the new land with nobody to help him while he is chased by colorfull ponies that want nothing but put him in a cage.

A young human called Alex is transported to Equestria without knowing how or why. After being discovered by Twilight Sparkle and her assistant Spike in the Everfree Forest, Alex soon learns that he is a very special case.
He now finds himself running for his life as everypony is out to get him.

Will Alex escape this ponified nightmare, or will he find himself as a prized catch?

This story was inspired by 'We will Catch You if we Can' by proto-alpha.

After a rather odd storm over the Everfree, Twilight and her friends are sent to look for a castle that apparently fell right out of the sky. But finding it will not be the problem; the challenge comes from dealing with the inhabitants. It might have been better if they had never gone looking in the first place...

Now in its native language thanks to System!

A collection of short stories in which the inhabitants of the land of Ooo and the inhabitants of Equestria interact in various ways.

May contain farting, poo, swords, dogs, apples, and lumps.

This story is a sequel to Welcome the Unknown

Nearly a year and a half ago, Discord ripped Matt from Earth to Equestria to use him like a battery while he slumbered in stone, biding his time. When the two finally came together, the mere human managed to outwit the Spirit of Chaos and put an end to his short reign.

Several months have gone by since then, and all things considering, Matt has made a decent life for himself. He has friends, a home, activities to help pay the bills, the usual. But on one particularly average day, something he never imagined he'd ever see again appears and – whether he realizes it or not – threatens to throw everything out of balance. Too bad it's only the first in a series of things to come. What does it mean for Equestria? More importantly, what does it mean for Matt?

Rated Teen for some language and a couple suggestive themes. Reading the first part is recommended, but references to what happened will appear here and there as the story goes so that you should be able to piece things together in case you decide not to check it out. If you do, I hope you enjoy it!

Cover art credited to IJAB. Go say hello!

A failed experiment.

Not exactly new for Twilight. But when the outcome brings forth its own science, the likes of which her nation hadn't even yet dared to hope for, the ponies of Equestria slowly realize that they're in for the adventure of a lifetime.

The problem is, they might just not be ready for the revolutions that technological advancement always brings.

And they're about to get hundreds of years of human science and advancements all at once.

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As a forewarning, updates will likely be erratic. I have every intention of finishing this story, it's just that my life has been rather crazy lately as I'm sure many of you can imagine.

Also, if you are going to leave a thumbs down, please leave a comment detailing why. Thumbs downs don't tell me much, and I can't make the story better until people tell me what's wrong with it.
Thank you for your time.

WARNING: There may be spoilers in the comments. Read at your own peril.

Covert Art brought to you by the amazing powers of photoshop with an artist's permission.