The storm is breaking on the Horizon.

It's been two months since the battle against Nightmare Moon. Luna is recovering, Celestia is busy turning the government back into a diarchy, and the Mane Six have returned to their lives. All seems well, but when Celestia discovers that half of the power of the Elements of Harmony have been transferred to each of the Bearers, she decides to send thirteen mysterious members of the Royal Guard to monitor them as they manifest and develop their new abilities.

The sins of a forgotten war still linger, and an ancient evil lurks in the shadows, just waiting for the right time to strike. The Mane Six suddenly find themselves once again at the heart of a conspiracy to bring about Eternal Night, and only by awakening their powers and realizing their full potential can they do anything to stop it. Friends both old and new will help them along the way, and an unseen force will guide them as it seeks to right a wrong made thousands of years ago. The Bearer's journeys will take them outside the borders of Equestria and into the world beyond, and when they return, they'll have the power and experience necessary to save the world and bring about balance in all things.

The Powers of Harmony TV Tropes Page (SPOILERS)
The Powers of Harmony Art

Thanks to Wildy71090 for the cover pic.

We All know the original story of the TV series My Little Pony FIM. This is a story where Twilight Sparkle is Princess Celestia's daughter and Princess Cadence is Twilight's older sister. Follow Princess Twilight as she goes from being a cute little baby filly to where she comes to a time in her life where she will be chosen to defeat Nightmare Moon, and free her long lost Aunt Luna. She must befriend the mares of the Elements of Harmony in time to defeat Nightmare Moon and save her mother's kingdom from eternal night. How will the events play out with all of Equestria, including the elements of harmony, knowing she's a princess? Well, only one way to find out every pony. Please Read and Comment, and I hope for no flames. This is my first Fimfiction so don't be to hard on me. I do not own any lines or characters from My Little Pony TV series, only OC's I may throw in.

Co-Author: StarStreak96 (many thanks)

Note: Chapters five through eight, and some of chapter nine will be following the episodes one and two very closely, so stay tuned. I also made changes to chapter six, to make it sound more like they treat her like royalty.

A thousand years ago, Princess Celestia banished her sister to the moon, that much we know. What wasn’t known, and what Celestia kept secret was that before her banishment, Luna had given birth to a foal. Now a thousand years later, as Nightmare returns to Equestria to bring about Eternal Night.

Twilight Sparkle, protege of Princess Celestia, struggles against the tyranny of this ancient foe. But how will she be able to save herself and her friends when the truth of this ancient legend crashes down upon her? Twilight will have to confront herself...and her heritage.

Polaris501

This story is a sequel to The Sword Coast

The shadows of the past plague the present.

Twilight Sparkle stands on a precipice, one false step from a dark destiny. Months ago, she set out to find her foster father’s murderer. After she defeated the Black Knight, she was hailed as a hero, but what she remembers most is the lives she took. On the path of strife, she discovered more about herself than she ever expected.

With her friends by her side, Twilight sets out for Canterlot, seeking the villain responsible for the death of her father and the crises that plagued the Sword Coast. On the way, a sadistic spellcaster interested only in power intercepts her and promises to unlock her potential. In the aftermath, Pinkie Pie is taken captive by the secretive wizarding order that rules Canterlot.

Twilight’s journey takes her through the doors of a prison and into the depths of a forgotten place. She encounters horrors made from nightmares and soul-stealing beasts raised from the black of the Abyss, but what she fears most is the monster within. How far will she go to save her closest friend?

Featured on Equestria Daily
Cover by Bluest Ayemel
"I love this fic. Keep it up!" – Sethisto (on the EQD page)

Side stories: Tales of the Sword Coast

Warning: Comments contain spoilers. Proceed at your own risk.

The Witch of the Everfree... a tale that has spread among all who live by the ever illustrious forest, to whom the witch truly is, no one knows apart from the one herself... until now. Twilight Sparkle had lived in the Everfree throughout most of her long life, since the corruption she was alone until not long ago when she met few companions. Trained along side her sisters through bond in arcane magic, given true immortality, she continued her studies alone only every now and again seeing how her race fared. Now, forty years after she was dubbed a witch by her race, three little girls stumble through her woods in search of the ever mysterious "witch", what could really happen? read to find out.

FEATURED: 16/03/14

Clarifications:
Many have wondered what Twilight looks like and such so to clarify, she does not look like a human female, she retains her fur coat, she is of human height and has hands. The facial structure is more detailed such as where the eyebrows should be there is a darker patch of coat much in the color of her mane.

The story starts a few episodes in, around halfway through season one I would say, some shall stay canon whilst some with alter, I am sorry for this inconvenience.

Twilight is still Twilight in every way, though she has been with little to no contact throughout her life apart from when the Everfree retained people, in such her words would become haggard sometimes so that's why you will probably go "huh" when you first see her talk to the CMC.

That is all for now.

When a dark enemy begins hunting the young wizard Twilight Sparkle, the walls of the fortress library of Candlekeep cannot protect her. Not even her mentor, the archmage Star Swirl the Bearded, can keep her safe. With a price on her head and the shadow of death on her heels, her only hope for salvation is the Magic of Friendship. Perhaps, with powerful allies at her side, she can find answers and uncover the truth about her destiny.

(This story is inspired by the Baldur's Gate CRPG series by Bioware, but you do not have to be familiar with BG to understand its events)

Featured on Equestria Daily
Cover by Bluest Ayemel
"I love this fic. Keep it up!" – Sethisto (on the EQD page)
"From it's fantastic character development of Twilight and fast pace and exciting action, The Sword Coast is an excellently written and well thought-out story." – Amy Clockwork

Side stories: Tales of the Sword Coast
Sequel: Shadows of the Crystal Empire
Warning: Comments contain spoilers. Proceed at your own risk.

This story is going to go through the process of a rewrite to keep canon with Season 4.

A young human boy of age seven is sent to Equestria by his loving parents in an attempt to save him from the end of the world. He is found by the Royal Pony Sisters and they bring him to Equestria to fulfill his parents' wish.

This takes place after Season 3 and is set in the Past Sins universe.

Edit: Changed a few of character tags.

Cover Art by PonnyGirl

A brony is transported into Equestria, but he finds himself in the body of a huge wolf. Can a carnivorous predator really befriend ponies, herbivorous equines, or will his new predatory instincts and the ponies instinctive fear of him make it impossible? His strange situation does not dampen the joy of actually being in Equestria, but that changes as an alien hatred starts gnawing at his mind...

An alternate universe story, in which Twilight Sparkle was born a pegasus, not a unicorn. Because of this, she isn't Princess Celestia's personal student at the School for Gifted Unicorns, and she can't wield the Element of Magic. Can she still help save the world from Nightmare Moon? Or will she fall under the dark powers of nightmares?

This was somewhat inspired by Rainbooms and Royalty, a story in which Princess Celestia picks Rainbow Dash to be her personal student.

Banishment.
Such a powerful word with such a simple meaning. A word most ponies never hear in their life...
"Twilight Sparkle,"
A simple word meaning to be sent away as a form of punishment...
"You have been proven guilty,"
But I haven't done anything wrong, have I? Anything to deserve to be punished? Being framed? Is that a crime?
"You are banished from Equestria,"
Why would they all just give up on me? I know the truth, but they refuse to hear it. Why won't they just listen?
"You are required to leave at once."
Just listen.
Before war overtakes us all.

Featured-- 3/5/14
Give cover art respect where it is due, meaning this guy.