In a remote corner of the Solana Galaxy lies a backwater planet called Veldin. Nothing important ever happens there. Nothing exciting, either. Ratchet, a Lombax with no idea of his origins, is beginning to grow bored with his life, and dreams of excitement. He wishes on a falling star for some excitement to find its way into his life.

The falling star answers by crashing into his home in the form of a basket carrying a tiny creature with a horn, a pair of wings, and four hooves. The name on the basket reads "Twilight Sparkle".
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Part of the PWNY-verse.

Edit: Now with cover art by the amazing G_Haze
Video Consultant/Technician: m2pt5 (he provides the infobot videos and similar.)

Edit: Game Timeline
Ratchet and Clank: Done
Going Commando: Done
Up Your Arsenal: Done
Deadlocked: Done.
Size Matters: Done.
Tools of Destruction: Done.
Quest for Booty: Done.
Crack in Time: Done.
All 4 One: Done.
Into the Nexus: Done.

Who is Scootaloo? Everypony knows about her present, but when it comes to her past there are as many different answers as there are questions.

Is she the love child of two star-crossed lovers? The last hope for the future? The child of a broken home? A mysterious figure fighting a war no pony knows about? Or is it something else entirely? Is she even a pony at all?

Twilight Sparkle decides to ask everypony in Ponyville and find out about Scootaloo...and the stories, rumors and gossip she gets will leave her wondering how the truth can ever compete with fiction.

My thanks to Page Turner for the new story cover!

Now has its own TVTropes Page!
http://tvtropes.org/pmwiki/pmwiki.php/FanFic/TheManySecretOriginsOfScootaloo

And has a featured page in the Non-Canon My Little Pony Funny Page!
http://tvtropes.org/pmwiki/pmwiki.php/Funny/TheManySecretOriginsOfScootaloo

Thanks to all my readers and fans for all the support and help I have gotten! I am truly touched.