This story is a sequel to Queen No More

Twilight Sparkle made the most foolish and selfless decision possible. She saved the life of Queen Chrysalis. The dynamics of Twilight's relationships begin to change as Chrysalis introduces the changeling hivemind to her pony caretaker. Chrysalis' only hope was to relieve her loneliness, but events begin to unfold that will change Equestria forever.

Nothing is stronger than the power of redemption...

NOTES
1. This is the sequel to Queen No More but there is a time jump between its end and Hive Alive's beginning.
2. This is Alternate universe due to the fact that this story will run off of a disparate timeline. Events forward of season 2 may be similar OR significantly altered.
3. There is mention in Chapter 3 of an old changeling tale titled As a Star. A version of this has been written by Farseer.

NO MORE UPDATES: The story is complete. A sequel has been made: Queen of Equestria.

FULL TIMELINE SUMMARY OF STORY AND CHAPTERS

2014 ANNIVERSARY AND HOLIDAY UPDATE
Updated outer cover, inner cover, and description!
2 new HD wallpapers!
Hive Alive 2013
Hive Alive 2014
New extras collection, Hive Alive Moments, including...
Too Hot
Perfect Marriage
The Hive Before Halloween
Take Two
Shy My Heart

Featured May 24th, 2014 and on every chapter release since then.

Art by BlackWater (that's me)

When Twilight is awake, Celestia is her teacher, and she a faithful student. But when Twilight shuts her eyes, another mare approaches, who teaches her a very different lesson.

An experimental fic, written to play around with alternative perspectives. Be warned, ye who enter here.

Twilight Sparkle never was a Unicorn and she didn't even know it.
What happens when her true heritage comes to light? Will she willingly embrace it? Or will she be forced to?

Beware of spoilers in the comments!

Edited by uTTerAbsurdity, Zervziel, Stormwatch and Gwenio

Cover art by the talented Cartoonlion and colored by the equally talented Stormwatch, original can be found here

Click here for the Tvtropes page

For years, Twilight Sparkle and Queen Chrysalis have been at each other's throats. Both have experienced victory over the other, and both have experienced defeat. Out of all the creatures in Equestria, none despise each other the way the pony Princess and changeling Queen do. They seemed destined to remain locked in battle forever, or at least until one is finally dead at the hooves of the other. The cruel insults, the vicious loathing, and the powerful spells that have passed back and forth between them at each meeting have become the stuff of legend.

Imagine Twilight's surprise when she finds out changelings consider this dating.

And now they're married.

***

Sequel: Pony Courtship Rituals

***

Some beautiful fanart of the end of chapter three was done by Dmann892; you can see it here.

More awesome fanart, this time from chapter one.

Now with a TvTropes page (obligatory TvTropes warning goes here).

If you want a Russian translation, you can find it here.

There is now a reading of the story on Youtube, which starts here.

Failing once in her attempt to take Canterlot and failing again in her attempt to take down Twilight, one would think Chrysalis would have cut her losses and let things be, but the queen has once again appeared, this time in broad daylight with no disguise and no army. Her weapon of choice? Diplomacy.

Now Twilight is having to deal with the changeling queen, but surely putting up with her antics will be worth the knowledge she's willing to provide about her mysterious race and the potential undiscovered agents still within their midst...right?

Takes place before Magical Mystery Cure and diverges from there.

With thanks to MisterGunpowder for proofreading and editing.

Revision History:

05/09/2015: Chapter 1 updated with millions of little corrections.
05/20/2015: Chapter 2 revised and edited with another million small and large corrections.
06/12/2015: Chapter 3 given a thorough editing and revision.
06/23/2015: Chapter 4 taken to the gutter and edited twice to be sure.
07/14/2015: Chapter 5 thoroughly brutalized with the editing stick.
08/03/2016: Chapter 6 finally edited. Yes, I'm still alive, dammit.
09/29/2016: Chapter 7 fell out of the editing tree and hit every editing branch on the way down.
10/26/2016: Chapter 8 has emerged from the editing emergency room.
11/17/2016: Chapter 9 found and edited. No casualties reported.
11/30/2016: Chapter 10 treated for whiplash after lightning fast editing.
12/22/2016: Chapter 11 edited. Chrysalis shot first.
01/17/2017: Epilogue edited. Time to hit the cider.

There's a lot of things about Cadance and Shining Armor that never quite made sense: their sudden appearance before the Royal Wedding; their suspiciously convenient suitability as rulers of the Crystal Empire; their oddly abbreviated pregnancy; and even their quick change of heart after Spike asked them to forgive Thorax.

Twilight Sparkle knows exactly how deep that conspiracy goes — she was there in the beginning, when her hive's queen created Shining. And she wasn't happy about it.

Finalist in the "Things Left Unsaid" December 2015 Writeoff! Rewritten and greatly expanded to fill in more backstory and to account for Season 6 canon.

Rated 'Worth Reading' by Titanium Dragon! "If [you like] the idea of a story which hints at a greater conspiracy behind the scenes which explains some of the plot holes we see in the series, you’ll likely enjoy this."
Reviewed by Matthewl419!

Cover art by Lo-23, using Twilight from "Deception is Magic" by Heilos.

A mother will do a lot for her child, even give them up if it meant them having a safer life growing up, despite the obvious pain that comes for the parent.

That pain is something Queen Chrysalis has gone through for eighteen years, but now the time is upon them, and she wants her daughter back. Even if that means invading Canterlot during a royal wedding.

Edited by RC2101_Copey
New cover art was created by the talented Jesuka
Now has a TVtropes page: http://tvtropes.org/pmwiki/pmwiki.php/Fanfic/Change
Go watch the reading by Skijaramaz: https://www.youtube.com/watch?v=Ecqtu_Djrw4

(Featured on 18/10/2015, the first day! Thank you!)

Change is now a printed book, information here: https://www.fimfiction.net/blog/732008/i-got-a-thing-change-is-now-a-physical-book

To better herself, Luna has studied Twilight's actions and friendship reports almost religiously. However, she never expected to find the tables turned and be under the microscope herself, nor did she realize that a pony would go so far for one they called friend.

Pre-reading/editing by auramane, Habanc, Foals Errand, Meridian Prime, and Timaeus

Cover art commissioned by me and done by Silfoe and can be found here. Thanks a bunch!

Twilight becomes alicorn of the stars. This is sort of a problem, because Luna kind of already was alicorn of the stars. Oops!

TV Tropes

This story is a sequel to Becoming One With the Night

It was supposed to be a good day. Twilight and Luna were sharing the news of their relationship with their closest friends and family. However, Celestia's largest secret yet finally came out. Now, relations are strained between Celestia and everypony else. After all, what's Twilight to do when she finds out her second mother is actually her birth mother?

On top of this massive bombshell, soon Twilight will be sporting a pair of wings of her own. If she thought things were complicated now, just wait until Canterlot gets wind of a new alicorn. Life is about to become one giant nightmare for Twilight. But hey, at least she has Luna, right?

As stated above, this is a sequel. I highly encourage you to read the first story (the writing is extremely rough early on, mind you), but it's not entirely required to understand most everything that will be going on here.

EDIT: Takes place during S3, when it was originally conceived, thus the Alt. Universe tag. There was no redemption of Discord. There was no ascension. Yes, the Crystal Empire is back, and Cadance and Shining Armor are the leaders there. This should cover the more critical aspects of the season in regards to the story.