In the EQG Holiday Special, Sunset figured out that Anon-a-Miss was actually Scootaloo, Sweetie Belle and Applebloom.
But what if things happened differently?
What if Sunset never figured out who Anon-a-Miss really was?
What if her friends refused to listen after her little chat with Twilight?
For those who haven't seen it, the comic can be read here:
https://www.youtube.com/watch?v=2-MMfsFt2NE

This story is a sequel to Fortresshy: The Nine Fathers

Fluttershy has returned to Equestria after being temporally displaced to another world, where she was raised by a loving but insane family. She didn't return alone, though. Her new family came back with her, now working for Princess Luna, their new Fortress being built near to Ponyville. All involved would need time to adjust.

Unfortunately, time waits for no one, pony or human. Still, the former RED Team - now Team RED MOON - is used to handling craziness. After all, they live under the same roof.

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Part of the PWNY-verse.

Edit: New fan art by G_Haze, who also did the cover art!

Red Team had been given an assignment. It wasn't the usual sort of assignment. They were assigned to defend their base 'until further notice'...and then never received notice. All announcements sounded pre-recorded, and enemy assaults were few and far between. The enforced inactivity was slowly fraying the bonds of the team...

...until something unexpected arrived. A tiny creature appears one day in their fortress, in need of compassion and care. Somehow, she finds that in this group of strange individuals, as she becomes their baby.

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Crossover with Team Fortress 2.
Part of the PWNY-verse.

Edit: Since I get these comments a lot, I will say here, I've never played the game and don't intend to include much in the way of game mechanics, so please don't suggest such things.

Edit 2: FAN ART! for chapter 9 by G_Haze. Makes me so happy.
Edit 3: More fan art from G_Haze, This guy's amazing!
Edit 4: New fan art! by The Pyromanecer. Thanks so much!
Edit 5: More fan art by shiningkord98.
Edit 6: New Fan Art by The Pyromancer
Edit 6: More awesome fan art from G_Haze! So awesome!
Edit 7: New fan art by Pioneering Author

Applejack comes across a Pinkie duplicate hiding beneath her barn wreckage. But, somehow, this one is different than all the others. She calls herself Pinkamena. Takes place right after Too Many Pinkie Pies.

Review by MixMassBasher

Edited by Razalon The Lizardman

February Write-Off Second Place Winner! Dodge Junction is a foul place, full of fouler people. At least, that's what Sheriff Bismarck wants Applejack to believe. And yet, here, among the dregs of society, Applejack finds an honest soul to help her rid her home town of a fearsome beast - a grizzled old outlaw, desperate for redemption.

Set in the Equestria Girls universe!

When Twilight Sparkle (the scientist one, not the otherdimensional pony princess) predicts an oncoming magical calamity, it's up to Sunset Shimmer and her friends to stop it!

Now, they've got just two days to cover hundreds and hundreds of miles to get to exactly where the dimensional incursion is going to take place.

Good thing it's Spring Break. Road Trip!

After being abandoned by her friends during christmas, Sunset Shimmer wanders the cold streets of town, alone, and with nowhere to go. After walking for hours, she eventually gives into the elements around her, only to be saved at the last second by the last ones she ever thought would help her.

Meanwhile, the truth about Anon-A-Miss has come out, and her five friends are desperately trying to find her so they can apologize for what they have done.

Applejack and Rainbow Dash have been close friends for a long time and, for some reason Rainbow Dash has never been able to understand, it seems as if everyone she knows expects them to get together eventually. To Rainbow Dash's surprise, Applejack abruptly decides that their friends are right and asks her out on a date. To Applejack's surprise, Rainbow Dash immediately turns her down.

Unfortunately for Rainbow Dash, Applejack is nothing if not stubborn, and she declares that she won't give up until Rainbow Dash has agreed to go on a date with her, no matter what it takes.

Winner of the second AppleDash group contest.

Starlight Glimmer had a painful fall, but she is more than determined to finish what she started. The message of Equality needs to spread across Equestria, and she knows just the mares who can help her...no matter how many years it takes.

But she soon finds out that raising six fillies that still represent the Elements of Harmony is easier said than done.

The Cutie Mark Crusaders have a history presentation today, and who better for Applebloom to bring than her Uncle Apple Strudel? He'd just love to talk to the class about his old country roots!

Applebloom is going to get an A for this, for sure!