Please do check out the Reading List by Lance Omikron to navigate the Amalgam Universe most clearly

A massive war of titanic forces is taking place in the Kaiju's world. However, when two faction's leaders, the current Godzilla and his 'brother' Xenilla duke it out; humanity unleashes its most devastating weapon. Something beyond comprehension occurred and the boundary that divides worlds, if only for the briefest of moments, was torn to shreds. New forms are taken, new bodies assumed. But old hatreds die hard. But how well can hatreds continue in the world of love and tolerance? Especially with its own demons follow it there?

Godzilla Franchise by Toho Company Ltd.
My Little Pony is owned by Hasbro Studios.
This is a non profit fan-work and I claim no ownership on the IP itself.
Story created by Tarbtano
Co-created and Contributed by Faith-Wolff and Skylark8756

HOLY SHEETZU WE GOT FEATURED! THANKS GUYS!
6/27/2014
Now on TV tropes (Thanks Raidrik, VampyGirl; Lance Omikron, Ultimomant, and ZimFan!)

Kaiju Cast:

Godzilla a.k.a Gojira
Xenilla
Mothra
Anguirus
Rodan
Destroyah

[Character copyright of Toho and Daiei Company, artwork property of Matt Frank]

(for any G-fans, Xenilla is the kaiju you may know as Spacegodzilla. I changed the name because I got quirked about typing it repeatedly and am writing the story so it can at least be understood by just an MLP or just a G-fan; and thought it get very confusing that one character's name was just another character's name with an adjective. Also... don't pretend it's the most imaginative name Toho has every made)

Isolated from her friends and taken prisoner in the middle of a war, Twilight must deal with the very real dangers of being percieved as an enemy as well as the nightmares of her arrival on 'Earth'. Can she overcome her own fears and the fears of her captors? Will the wayward unicorn's assistance be a boon or a curse to the 'humans?' Most importantly, will she ever find her way home?

"In short, it's a story of friendship and plasma rifles, with the emphasis on the friendship. The characters are well written, the XCOM setting is fleshed out very well, and the story is compelling. If you love XCOM, you'll love the story, but even if you've never heard of it, it's more than worth giving the first 3 chapters a read.

There's excellent action later on, but the real strength lies in the collision between the friendly and naive world of Twilight Sparkle and the desperate world of humans fighting a losing war for survival and willing to do anything to turn the tide."

--Arzoo

(XCOM/FiM crossover)
(Cover art commissioned by a friend and created by the magnificent FoxInShadow!)
(Original cover art by the amazing Carnelian can be viewed here!)
(Gore tag for blood and some violence)
(Many thanks to the studius OminousTen, Arzoo, xXFluttershyForeverXx and finally Setokaiva for giving my rambles a once-over)
(Now with it's own TV Tropes page! Get to tropin' folks!)

Seath the Scaleless, White Dragon God of Verdite, Traitor to the Everlasting Dragons, Duke of Anor Londo, Grandfather of Sorcery, and now the new friend and mentor to Twilight Sparkle? What will happen when two like-minded souls from opposite ends of the morality spectrum match wits? And what will remain in their wake?

A somewhat more meta twist on a MLP/Dark Souls cross-over, inspired predominantly by a few pictures I found of Seath and Twilight together, and my bewildered discovery that for all of the stories on this site that cover these two franchises, there's only one that focuses on Seath the Scaleless and so far it hasn't seen any updates in over a year ( http://www.fimfiction.net/story/68621/scales for those curious).

For those who haven't played either the King's Field or Dark Souls games worry not. I'll do my best to either explain the lore of both in the story itself, or add an author's notes for anything that gets referenced.

UPDATE: New custom cover art at last! Courtesy of Cryophase ( http://cryophase.deviantart.com/ )

Editing is courtesy of lunarstallion

Curious about Five Score? Come check out the story that inspired dozens of side fics and been enjoyed by bronies for years!

Original Synopsis Even though MLP:FiM ended a few years ago, my friends and I still loved the show. Stories, merch, fan art, I loved it all. Things started to get a weird though when I found myself with a cutie mark appearing on my leg. Humans aren't supposed to get cutie marks, so where the heck did this come from? And what's going on with my hair?

More Detailed Synopsis: Five Score is an action/adventure story of the human-to-pony transformation genre. It’s unique from most transformation stories because the transformation itself is not really the point of the story. It’s the inciting incident that raises countless challenges that must be resolved. They are on earth, as a pony, and need to fix this before things get worse. Think about yourself in their hooves for a moment. How are you supposed to change back or even figure out what caused it in the first place? How are you supposed to get food or do anything on Earth without being spotted by humans? If you are spotted or captured, how would you escape? How does one even open a door with hooves!? Did anyone else on Earth get changed as well? How could you get the word out to the other ponies who are themselves hiding? Is it worth risking travel across the country to reach the others? Which of your friends would you trust to help you deal with this? And why did you turn into this particular pony? Surely it wasn’t random chance, right?

These challenges are the tip of the iceberg in this full length adventure novel There’s a lot of humor, many tense scenes, and hell maybe even a war.

But don’t just take it from me, Look what random people on the internet are saying about Five Score, Divided by Four

One of the best things to come out of this fandom.
-IrraticDrop

This made me change how I think about fictional worlds, imagination, and creativity
-relgukxilef

The only story on FimFiction to have me literally shaking with excitement.
-jeramiahsental

SWEET FILLY LUNA I AM FLIPPING MY SHIT RIGHT NOW
-Shadow Reaper

Five Score master editor:
Scrub

Five Score proofreaders:
Comrade Sparkle
Rustle my Jimmies

This story is a sequel to Reformation of the Hives

Even though the threat of the jungle queens and Grogar have been diminished, life often times does not get wrapped up in a neat little bow. More troubles present themselves large and small. Our only hope is we keep passing life's constant tests, even when it is the last thing we wish to do.

Far, far away from the Equiss system, the queen of blades is readying the launch of her newest weapon. A ship designed to infest an entire planet in secret, readying it for the eventual zerg invasion and softening up even the hardest target, Korhal. Unfortunately for the queen of blades, the untested zerg biotechnology is more difficult to master then she thought and the infestation ship vanishes after launch.

Untold eons later Twilight Sparkle is preparing for her entrance exam for Celestia's school for gifted unicorns only to stop when she sees a star fall into her new treehouse. The young pony sets out in the middle of a storm, intent on seeing this fallen star for herself.

What she finds inside will change not only her destiny but the destiny of all on Equiss prime.

Make sure to check out the sister story to this one.
Trigger warning, parasites. Starcraft Crossover!
Updates twice a month!
The story so far!