First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

Have you ever woken up as a vegetarian cartoon pony? I have, and she won’t shut up about it. I’m stuck in her body as our minds swap control and our memories blur. I can’t seem to do anything right, and it’s even worse when she’s in charge.

Now, we’re in a back and forth war for control of her body. I just want to eat meat again, and have a little personal space. She’s convinced I’m hitting on her friends and trying to score. I’m not sure I can survive the rest of the day, let alone until we fix this.

Edits by: Selbi, Abcron, Breath of Plagues, Refro, Jaestring, The Parasprite, Starbound Gurren
Pre-read by: SkeeterTL, Solidfire, Penjacker, TypewriterError, Pearple Prose
(It took all of them to corral my insanity.)
Cover art by Tsitra360
V1.1-Rated teen sex for strong innuendo.
V1.2-Pinkie Pie now enforcing RIAA guidelines.

There is a legend. A legend of six heroes destined to protect Equestria from danger. But these six are not the Elements of Harmony. They are more.

The Steadfast Commander.
The True Genius.
The Vigilant Eye.
The Merciless Wrath.
The Fighting Spirit.
The Lone Wolf.

They are the true Protectors of Equestria.
They are the Guardians.
They are Noble.

Alright, so here is the story I have teased on my blog, The Noble Guardians! If you already guessed the concept, good for you! But for the rest of you, this is a Halo: Reach Crossover. I have seen a couple fics in which Six or Jorge are brought to Equestria, but they were always alone, so I decided to bring them all together as one. This will follow the show's storyline, with Noble acting as additional characters to the episodes, but don't worry, I guarantee they will be major characters with their own arcs and there will be plenty of original situations. I will also most likely skip any episodes in which Noble would have little to no involvement. (This will be few and far between, one example being "Call of the Cutie" I mean, even the Mane Six are only minor characters in that episode. I'll probably either mention those in passing or have another story going on with those episodes occurring in the background.) Anyway, see how Noble reacts to becoming Equestria's destined protectors!
Cover image credit goes to Gekko3309.
Naturally, this story contains spoilers for Halo: Reach

Princess Celestia tires of constantly being surrounded by decorum, deference, and formality, and decides to take a day off from being Princess. But visiting Ponyville incognito is harder than she expects. Will she be able to fit in and make friends without blowing her cover?

This story is a sequel to Past Sins

Side-story to Past Sins - Slowly, the wounds inflicted by Nightmare Moon's reign heal. Ponyville is being reconstructed, and the last refugees are leaving the castle. Nyx is with Twilight. Celestia and Luna rule Equestria and guide the sun and moon once more. Everything is as it should be.

But some things are never washed away. These are the things that remain to remind us of the past. They remind us of the good times we've had with friends and family. They never let us forget the mistakes we've made. Everyone has them. Twilight has them. Nyx has them.

And, on occasion, when you share your scars, your photos, and your trinkets with another, they just might share theirs in return.

Rainbow Dash, best pony, fastest flier in Equestria, all around awesome mare, was called upon to help with the wedding of her friend's big brother. And hey, she never leaves her friends hanging! Of course, when it turned out some kind of bug thing had replaced the bride, Rainbow was more then ready to fight. Heck, even after it seemed all hope was lost, the pegasus refused to give up.

So when she saw Shining Armor charge up a final spell, she smirked.

But when that spell reached her and flung her against the wall, her smirk devolved into shock...

Cover art is a combination of Deception is Magic vector by Helios and Sonic Rainboom Version One by SkyRings.

A human wakes up to find that not only has he been altered in species and gender, but that he has also landed halfway across the world from Equestria, in an unfamiliar land.

This is not that story. Not yet, anyway.

A decade in passing and Kaz has gained a reputation as a member of a well-known group of explorers traveling the world. Not once have they set foot on Equestrian soil, and she was content to keep it that way, for her appearance would bring about unwanted attention from a few certain ponies and one certain baby dragon. So what happens when the rest of the group hears of unbelievable tales of Equestria, and decide that it's time they paid a visit?

An impending disaster, that's what.

One normal and completely average morning, everything went wrong. Rarity arrives at the Castle of Friendship to pick up Spike for their weekly gem hunting trip, only to find that Spike has locked himself in his room and Twilight is working herself into a frenzy in the library. As she tries to piece together what happened that morning, and mend a damaged friendship, she'll make a number of startling revelations.

Some of them bigger than others.

Cover art used with permission of Kilala97.

Thanks to The Albinocorn for proof reading.

No marriage is without its challenges, especially not that of Spike and Rarity. Despite the fairy tale-like circumstances surrounding their courtship (Beauty and the Beast is a popular reference made at dinner parties), their relationship is far from perfect: indeed, the combination of her overwhelmingly large dress orders and his frequent extended trips across Equestria as Celestia's personal envoy makes it seem as though neither one of them has any time for their significant other. Yet there is one key factor, one constant variable in their lives that will always be there to remind them of how much they love and care for one another, no matter what issues they face.

Thank Celestia they have Claire.

Featured 3-27-14!
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My third foray into the Kilalaverse. Don't know what I'm talking about? Click here to find out!
Pre-read by the Lady herself, Ms. Kilala.
Spike, Rarity, and MLP: FiM in general © Hasbro/Lauren Faust
Crystal Clarity © kilala97 of DA

A freak lightning storm, strange lights, and an unassuming, yet mysterious stone obelisk. What do these things have to do with an average college student from North Tonawanda? At first, nothing. But when nineteen year-old Connor lets his curiosity get the better of him and lands in the center of a cosmic coincidence, he probably should have left well enough alone.

Now he finds himself stranded in an impossible world where magic is real, and "normal" takes on a whole new meaning. A world populated by sentient creatures calling themselves "ponies." A stranger in a strange land, Connor's yearning for answers and a way back to Earth will try both his patience and his sanity in the days following his arrival, even with the support of his new equine friends. But as he witnesses his life slowly spiral out of control, he will call into question his definition of home, humanity, destiny, and what it means to truly belong.

Rated Teen just in case for occasional swearing. This story takes place shortly after the end of Season 2, and the main character is from an Earth where MLP never existed (in order to preserve proper characterization). Or just assume he's never heard of it, that works too.

The title is not an Evangelion reference, I was just inspired by the wording scheme.