Humans.

Truth or myth? Ancient lost civilization or just an old pony's tale?

No pony has ever seen one, and most haven't even heard of them. But Lyra knows that these wonderful creatures are more than just old legends, and she's going to find out... and possibly drive her roommate insane in the process.

Pinkie Pie throws excellent parties. This is a fact of life, like Fluttershy being rather demure, or Rarity having a sense of style. But the fact is, Pinkie's parties cost bits, and her job at the bakery isn't supporting her passions anymore. So she dusts off her degree and opens a side business...

Equestria is growing, and magical savant Twilight Sparkle is disgusted by the crime and corruption this change has brought. Her life is changed forever when she discovers the Death Note, a notebook with inexplicable and deadly powers. She uses this book to pass judgement on those she deems unworthy of life, aiming to create a perfect world free of crime. But when the two Princesses put their best pony on the case, a mysterious detective known only as L, a psychological game of cat and mouse erupts between the two.
Comments contain spoilers. Artwork by blu-red, opening by Anon3mous. Now with its own TV Tropes page.

Mewtwo, the strongest being in existence. A creature of unmatched power, a twisted product of science and mad ambition; now free from its former masters, it has only experienced defeat once: by the hands of a young human boy wearing a red hat. Now, he foresees the coming of a new trainer that could threaten his power, and he knows he cannot face it alone.

In Ponyville, Twilight Sparkle and her friends are investigating a mysterious magical signal that has been plaguing Unicorns all across Equestria for days. Instead of finding its source, however, they are drawn into a mysterious world by a strange, pale creature, and scattered to the winds one by one. Now they must find a way to survive in this strange world...and eventually, a way home.

In Johto, unnerving rumors of Team Rocket's resurgence bring unrest to the people, and three mysterious beasts roam the land. Meanwhile in Kanto, the legendary birds grow wary, and its ever watchful Gym Leaders are starting to realize not all things are as they may seem.

In Canterlot, Celestia will soon be informed that all the six Element bearers have mysteriously gone missing...
And in Pallet Town, Professor Oak is about to get a call from his grandson about the discovery of a strange, new Pokémon species.

Are you ready?
Your very own tale of grand adventure is about to unfold.
Fun experiences, difficult experiences, there's so much waiting for you!
Dreams! Adventure! Let's go to the world of Pokémon!

I'll see you later!

**FEATURED on 8-10/3 2013**
**NOTICE TO ALL READERS - This story follows the storyline of the GAMES and NOTHING ELSE. If I change that policy, you will be notified, but until then PLEASE STOP ASKING ABOUT ASH KETCHUM or things like that. It gets really annoying after a while.**

You and your family have just moved to a town called 'Ponyville' after deciding Canterlot was not the right place. You said goodbye to your friends and your old town.

Now, all you have to do is make friends and continue on living life.

It's a shame that some of them don't want to stay just friends.

Trigger tags:
(Process of being rewritten)
(Second-Person Perspective)
(Anthropomorphic ponies)
(Multiple endings)

Things go smoothly at the start of the first semester,
Until of course, when you meet this strange girl from Cloudsdale and sets motion to a series of events that will change your life forever (until you die, of course). Will this change be for better? Or for worse?

~A second-person story.

WARNING: There will be some suggestive themes in most of the chapters. MOST of the chapters.

During a picnic, a mysterious portal appears out of nowhere in plain view of Twilight and the rest of the gang. Curiosity gets the better of them, so they decide to enter the gateway to another world and see what's on the other side.

After transporting them to this strange new world, the portal powers down inexplicably, trapping the Bearers of Harmony in a strange cube land with no way back.

How will they get home? What dangers will they face lurking around every corner?

More importantly, what does a lonely crafter have to say about all of this?

A re-imagining of my old story, with heavily edited chapters.
Cover art courtesy of the talented Sharpieboss
Minecraft/My Little Pony crossover

While having a small chat at the library Twilight asks Rainbow Dash if she would come with her to Canterlot in the morning to attend a presentation on Biology the unicorn was already planning on seeing. After some convincing from Twilight to follow her Rainbow Dash hops on the train and heads to Canterlot for a few hours of real education.

Well, it appears that me and a bunch of people with varying degrees of friendship with yours truly have been --somehow-- teleported to the one place I never thought I'd see.

Or maybe we were trans-mutated. Transmogrified?

Never mind.

Now, I've got to find the other five people that had to have been thrown in here as well, all the while having to relearn even the most basic bodily functions and commands.

Fun.

Oh, and did I tell you the best part?

We're all Pokémon. Yep, as if being tossed on your rear into an alien world as a strange creature wasn't enough, now we've got to deal with the fact that no one in Equestria knows what the heck we are.

I can feel a headache coming on already.

Click here to read the sequel, A Legendary Issue!

When a man finds out that he's a shell of his former self due to a meddling death god, how exactly will he take it? Pokemon Crossover.

Don't mind me, just following the crowd.