First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

Side story to Starscribe's fine work The Last Pony on Earth. The main character was on vacation when the Event happened and hands were replaced with hooves. An attempt to find food & shelter is made after the apocalypse.

Now with 100% more cover art! My good friend Lionheartcartoon, also known as half of the creative team on the PMV "Children of the Night", happily put this together for all to enjoy.

Luna discovers something hidden from Celestia for twenty years, now, with emotions running high, she enlists the help of the Mane 6... but what seemed to be a single mystery, soon reveals a darker and much more complicated plot that will soon decide the fate of Equestria.

Check out the Empty Room TV Tropes Page (Warning: Spoilers!)

Revised chapters edits and proofing (with many thanks) by: lammy, Trevor, Nick Nack, Fifth Alicorn

When Twilight Sparkle was just a kid, her best friend was a girl named Sunset Shimmer. Though their friendship had a bit of a rocky start, they quickly became inseparable, no matter how much everyone thought of them as ‘weird’. They were there for each other.

Were.

Years after the tragic accident that tore them apart, Twilight is determined to move on from her loss, and she sets off on an independent research project to investigate the strange happenings at Canterlot High. Little does she know that she will soon come face to face with what appears to be a literal ghost from her past.

Coverart by Kare-Valgon. Chapter illustrations by Zorbitas.

Edited and Pre-read by Dubs Rewatcher, r5h, and Kalan.

Takes place after Rainbow Rocks, but was written before Friendship Games and does not take it into account.

Chinese translation

Print copies now available.

When Twilight is attacked and nearly killed by a madpony claiming to be her brother, she, the Princesses, and the rest of the Elements of Harmony find themselves saddled with a shellshocked soldier who would like nothing less than to end her life. While they help him adjust to normal life, he makes his story known - and what he claims causes them no end of worry.

This story is a sequel to A Colt Once Forgotten

Their mission was to drop into Pakistan and retrieve a CIA asset, a quick in-and-out rescue op. But the op was more than a little odd; communication with command was immediately lost, a cloud bank appeared seemingly from nowhere, and the CIA lost its people in even an shadier way than usual. Pararescuemen Jack "Frost" McDaniel and Harris "Duke" Sky will soon learn that there is a lot more happening in this not-so-simple rescue operation than anyone could ever have known.

Preread by the incredibly talented totallynotabrony

Twilight and her five friends are transported during a botched spell, across dimensions to... Ponyville, Equestria? But not the same one that they knew. Sitting on a bench is Harpsy and Babar. The Doctoress avoids apples from an aspiring Applebuck. And in a library across town, six stallions join their forces as they try to decipher the appearance of filly look-alikes of themselves around Ponyville!

Twilight Sparkle has too much magic, and it will take her decades to learn to control it. Her spectacular loss of control during her entrance exam only proves that fact. She is a danger to herself and others.

After Sunset Shimmer’s disappearance, Princess Celestia needs a new student to bear The Element of Magic to defeat Nightmare Moon. With all of Equestria at stake, Twilight Sparkle…is not the pony she needs.

Princess Celestia seals Twilight Sparkle’s magic with the distant promise of one day teaching her.

But there are two diarchs of Equestria. Amidst a lucid dream, an offer is made.

“Hello, Twilight. Would you like to be my student?”

Cover art provided by Lafiir.

We all know the story of how the Princess’ young student and five friends defeated Nightmare Moon and brought Princess Luna back to our lands. But what if the tale were false? What if the young Twilight Sparkle on the event of her entrance exam had not been rescued by Princess Celestia, but instead lost her mind among the power of her youthful surge and had to be sent away, far away before she could destroy all of Canterlot with her newfound power. Now the feral unicorn prowling the Everfree Forest only vaguely remembers her past, slipping away from constant terrifying attempts to capture her.

And she is beginning to remember what true power felt like.

Editors include: Peter, Justin, Featherprop, Mitch H, and Bad Horse
Featured on Equestria Daily
Reviewed by Chris on One Man's Pony Ramblings and by Paul Asaran on his review blog
Now with a TV Tropes page

Physical books are available on Lulu.com
Monster in the Twilight (Paperback) 272 pages
Monster in the Twilight (Hardback)