After thinking over the issue of other ponies in Equestria having severe problems, Fluttershy wished to have a pony to care for and help them live a good life. While it came true, she got her wish in the form of an ambiguous pony who appears to be more timid than herself. But is there more to this pony than Fluttershy could possibly comprehend? Stay tuned for more!

Added the 'Random' Tag because madness.

My Little Pony: Friendship is Magic is copyright of Hasbro
Soul Eater is copyright of Atsushi Okubo/ FUNimation

Cover art belongs to Errick of deviantART

After being cast away by their superiors for a crime that was not their fault, a group of assassins are on the run with the goal of finding the one responsible for doing so and exacting their revenge on him.

In their search for an area to rest in and keep under their pursuers' radar, they come across a land unlike anything seen in their world. Will they manage to blend in this wondrous place without resorting to violence? Stay tuned...

My Little Pony: Friendship is Magic is copyright of Hasbro
One Piece is copyright of Eiichiro Oda/ Toei Animation

Inspired by Fullmetal Pony's story My Little Pirates: Luffy's Adventures in Equestria

Rarity had always been a pony with high aspirations to succeed. With the galaxy now open to her and her planet, being the best in Equestria just doesn't seem to stack up, compared to best in the galaxy. After a great deal of searching, she has found a shop off-world that is willing to sell her latest non-pony designs; the problem? She needs to find someone with a ship that can get them there.

Simon Ortell is your typical cargo hauler. Never staying in one place, always following the credits to his next job. With the current civil war kicking up in the Mandalorian Federation, he, like so many other freelancers, has been making quite a bit of credits off the conflict. Sick of getting shot at, he accepts what should be an easy job moving dresses, of all things. But after a call for help from an old "friend", things are about to get very complicated.

Join this unlikely pair as they run for their lives through the galactic underworld and find themselves the targets of hired guns, bounty hunters and assassins alike.

Set after the events of Of War and Friendship and during the events of On the Side.

Cover image by the lovely and talented QuiltasticInk

In the dark depths of Asgard, Loki Odinson sits, punished for his crimes on Midgard.

But new developments cause the wayward son of Odin to escape his prison and seek refuge across the Nine Realms in a land very much unlike any he has ever seen: Equestria.

While Loki makes a new life for himself in Equestria, Thor must once again gather together the Avengers and give chase to his escaped kin. But will the lies Loki feeds his newfound friends send the Elements of Harmony on a collision course with the protectors of Earth?

(Cover image by the wonderful Reiduran)

What if Nanoha never became the White Devil?

Twilight Sparkle, as everypony knows, is a magical pony by nature and profession. However, even she is confused when she encounters a mysterious ferret and an equally mysterious jewel. Forced into conflict by a monster attack, Twilight releases the power of the jewel, summoning the device known as Raising Heart.
Tasked with the retreival of a set of mysterious artifacts known as the Jewel Seeds, Twilight and her friends face an entirely new set of challenges. Unbeknownst to them, however, forces outside of Equestria are moving to claim the very same artifacts they now hunt.

A crossover with Magical Girl Lyrical Nanoha, with an equine twist!
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A sequel has begun. Go Here For Magical Pony Lyrical Twilight A's

Magical Pony Lyrical Twilight by PurpleProse is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License.

For as long as any of the Cutie Mark Crusaders can remember, Diamond Tiara had always been the biggest bully they knew. But when that said bully dies in an accident, each of them starts to go through their own emotional experience from this sudden change in their lives. Each will learn more about themselves and about the pony who they all thought they knew before she is laid to rest.

***Takes place just after season 3 but before season 4. This story is completed.***

Now with TV Tropes page

After discovering that Cadence is not who she appears to be, Twilight is sent to another world entirely by the disguised Changeling Queen to avoid her plan being disrupted.
When Twilight lands, she discovers that not only have Spike, Owlowiscious and Peewee followed her, but that they've arrived in a world where the main sentient species is human.
There's still a place where they teach magic, though.
Crossover with Harry Potter. Twilight will be effectively taking the role of Hermione.

I've marked this story as cancelled to reflect the unlikelihood of it continuing. If I do come back to it I'll revert that.

Trixie appears once more in Ponyville, but something is...off...about her. She isn't speaking in third person. She is convinced that she is supposed to be the Element of Magic, that Celestia is supposed to be the Tyrant Sun, that Luna is supposed to rule as Equestria's monarch - and that Twilight is supposed to be a wanted criminal. Has she gone insane? Or is something bigger beginning - with consequences that Trixie, Twilight, and two entire worlds, can only guess at?

The long-awaited Crisis on Two Equestrias begins at last!

While reading the stories of The Lunaverse can only enhance your reading experience, it is not necessary for this story! It is being written as completely, 100% stand-alone, with no prior knowledge necessary!

Rainbow Dash attends her hometown's Millennial Summer Sun Celebration, where she meets a peculiar pink pony. When a strange portal appears during the testing of Twilight Sparkle's latest invention, and pulls their new companion inside, the two friends give chase and embark on the most important adventure in all of history.

Equestria Daily | TVTropes

This story is a sequel to From The Gates

Taking place three months after the events of From the Gates, the Elements of Harmony and the former homunculi were enjoying their new lives and what has been laid in front of them. But after a large accident at the Grand Galloping Gala, all sorts of chaos will unfold. Will the Elements succeed a third time with the help of the homunculi, and will Greed finally know the meaning of Generosity? Stay tuned for more!

Future chapters edited/proofread by Pixel brony and Dawn Flower.

My Little Pony: Friendship is Magic is copyright of Hasbro
Fullmetal Alchemist: Brotherhood is copyright of Hiromu Arakawa/ Hiroshi Onogi/ Square Enix