In 2185, during his campaign against the Collectors, Commander Shepard discovered a previously unknown species whose origins predated any other race in the modern galaxy. Following a daring rescue from their ancient sanctuary, the Equestrian Herd was brought back into the galaxy where, for the first time in eons, they must walk their own path.

Knowing full well the terrible threat that lingers on the edge of the galaxy, the leader of this newly freed race fights to secure her people’s future while attempting to prepare for the storm on the horizon.

This is her story.
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The long awaited Sequel to Mass Effect 2: The Equestrian Equation This is a reader directed story. Your choices will shape events.
If you favorite, also like! It's one little button click that makes all the difference.

Also, this series has its own TVTropes page now! (Special thanks to user CrowMagnon for setting it up).

In the far future of Equestria's history, ponies and the other species of their world have ventured out to live in all the wondrous corners of their sparkling galaxy. Now, the spiral arms hold both the borders of six great civilisations and vast unclaimed regions of glittering stars.

Starships of all shapes, designs, and sizes now carry their crews as they seek adventure, fame, fortune, curiosity, or for some...to discover the secrets of the galaxy's turbulent past. But to many others, it's simply their day-to-day job to haul cargo and make a life in the space between worlds. To be one of the thousands who keep the galaxy running.

To be one like the cargo ship Claudia.

The crew of the small vessel all came from different places, desiring different things. Whether it was their wish to do this to prove themselves, their need for the money to save a loved one, their ambition to make a name across the stars, or having to make do with a path in life they hadn't expected to find their dream. But no matter their mixed origins, no matter their unassuming nature, they have one truth of the galaxy to discover.

That the black leaves few without trials if they wish to find a home within its both beautiful and foreboding expanse.

Coin Slot, a slaver in the Equestrian Wasteland, is making just a regular sale when something a few miles away explodes violently. Deciding to check it out, she discovers a strange weapon of unknown origin that seems to mesmerize its targets. There are... drawbacks to this weapon, however, and its discovery soon leads Coin down a chain of events that will change her morals, lifestyle, and even her very soul... provided that she manages to survive. Will the friends she makes be enough to convince her that her slaving ways are immoral? Or will they just reinforce the belief that that is one of the best ways to survive After the End?

A side story of Kkat's Fallout Equestria. Which is excellent.

Here's a link to the Gdoc's index

Cover image by http://felixattchar.deviantart.com/. He's awesome. Look at his stuff.

A normal end to a normal day -- at least, that's what it was supposed to be.

But it wasn't.

Luna went to raise the moon as usual, but something went wrong. Terribly wrong. She felt it, but she couldn't stop it.

None of us could.

It appeared too suddenly -- acted too quickly.

The only warning we received was a roar and a bright flash of light, then everything was gone. No more Canterlot, no more ponies, no more anything.

Nothing survived.

Nothing... except for us and whatever 'it' is.

We may be immortal beings, but that doesn't make things any better -- if anything, it makes the pain all that much worse. The only thing we can really do now is try to avenge those dear to us. Our subjects... our families... my friends...

Everything.

I don't care how long it takes, and I don't care if it's a pointless battle. All I care about now is making sure we put that thing down for good.

After that?

Well...

Cover art done by Little Tigress. Check out her other stuff on deviantart if you wanna see more!

This story is a sequel to Awakening

This is the long dark night of the soul. More than 10,000 years have passed since Celestia’s reign over Equestria ended and the entire continent sank into the ocean and faded into myth and legend. Although the pony tribes have colonized the stars, the earth ponies have lost their connection to the land, the unicorns no longer think magic even exists, and the pegasus tribe has forgotten how to fly.
Although the principles of magic and friendship and Harmony are under constant assault in this age of war and strife, a pegasus named Thunder Gale has travelled to the ends of the galaxy in search of a long, lost friend of his. His search has led him to a planet where the old ways have not been entirely forgotten and evils left dormant since Celestia’s time stir once again. In order to survive the night, he’ll have to seek out guidance in the last place he ever thought of looking: the wings on his back.
Not a crossover nor an alternate universe, this is the far future and all this has happened before, and will happen again.
Cover art by Silfoe.
Now featured on Equestria Daily!

Monster attacks. Crime. Illegal hallucinogens made from electric fruit.

They say things didn't use to be like this. They say things were different, before Luna came back 60 years ago, but Detective Hard "Hardy" Boiled of the Detrot Police Department has never known any world other than that demarcated by the seedy streets of his beloved decaying metropolis; a world in which the coroners sing and dance, surveillance bugs have personality disorders, and the Chief of Police is a scarier entity than most of the eldritch things the city attracts.

The grey unicorn who turned up dead outside the posh High Step Hotel seemed like just another case, but her missing horn is the pointy tip of a very large and nasty iceberg. It's up to Hardy and his friends - a rejected monster hunter, a psychic cab driver, and an underground antiques heir - to find out what’s going on in an investigation that promises to stick more than a cupcake into the very eye of Detrot.

Especially if Hardy has anything to say about it.

By Popular Demand, there is now a Patreon

Additional editing by coandco Sig_Awesome, Hinds, Clint, and Raccoon!
Featured on EQD - 5 Stars!
Cover art by MisterMech (http://mistermech.deviantart.com/)
Now with TVTropes page here!

Have you ever had a dream that just seemed so real, that it was impossible to say for certain that it was even a dream at all? A dream that, despite all of its impossibilities, seemed to re-write your entire perception of reality, re-writing your sense of what—and indeed, who—you are? Accepting change is hard enough as it is. But when you're a somebody who wakes up as a somepony, how do you cope with the impact such a drastic change has on your mind and body? With changes like these, it must surely just be a lucid dream—albeit a suspiciously accurate one—just brimming with potential and ripe for exploration. So you might as well suck it up and make the most of these distressingly…unusual circumstances, and seize this psychological adventure before you wake up and the dream ends.
After all, this couldn't possibly be real, so the dream must come to an end eventually…right?

The Princesses find an alien creature barely clinging to life at the scene of a terrifying crash. Can the Combined Power of the Elements of Harmony save it, or more importantly, should they save it? Will the arrival of this strange creature tear Equestria apart?

TV Tropes
https://tvtropes.org/pmwiki/pmwiki.php/FanFic/Article2