Red Team had been given an assignment. It wasn't the usual sort of assignment. They were assigned to defend their base 'until further notice'...and then never received notice. All announcements sounded pre-recorded, and enemy assaults were few and far between. The enforced inactivity was slowly fraying the bonds of the team...

...until something unexpected arrived. A tiny creature appears one day in their fortress, in need of compassion and care. Somehow, she finds that in this group of strange individuals, as she becomes their baby.

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Crossover with Team Fortress 2.
Part of the PWNY-verse.

Edit: Since I get these comments a lot, I will say here, I've never played the game and don't intend to include much in the way of game mechanics, so please don't suggest such things.

Edit 2: FAN ART! for chapter 9 by G_Haze. Makes me so happy.
Edit 3: More fan art from G_Haze, This guy's amazing!
Edit 4: New fan art! by The Pyromanecer. Thanks so much!
Edit 5: More fan art by shiningkord98.
Edit 6: New Fan Art by The Pyromancer
Edit 6: More awesome fan art from G_Haze! So awesome!
Edit 7: New fan art by Pioneering Author

Bon Bon's voice is funny, and that's about all that anypony who meets her notices, as her marefriend Lyra soon steals the spotlight with her explosive personality, strange obsessions, and curious beliefs. And why not? Bon Bon is, after all, a perfectly ordinary, boring pony in every way but two: her voice, and the carefully kept secret that she isn't really a pony.

(Edit:) Now with an annotated version, courtesy of the incomparable Shoggoth Lord!

The legends told of their return.

For over a decade Equestria has been beset by the dragons. Every year more villages vanish in flames, and the lonely cities stand as our last redoubt. Winter has gripped the world, and our hope is fading.

But the legends tell of another, a light in the darkness. The Dragonborn, a mythic warrior reborn with the power of the Voice, the only one who can stand against the dragons.

But when she appeared, she was not what we were expecting...

A freak lightning storm, strange lights, and an unassuming, yet mysterious stone obelisk. What do these things have to do with an average college student from North Tonawanda? At first, nothing. But when nineteen year-old Connor lets his curiosity get the better of him and lands in the center of a cosmic coincidence, he probably should have left well enough alone.

Now he finds himself stranded in an impossible world where magic is real, and "normal" takes on a whole new meaning. A world populated by sentient creatures calling themselves "ponies." A stranger in a strange land, Connor's yearning for answers and a way back to Earth will try both his patience and his sanity in the days following his arrival, even with the support of his new equine friends. But as he witnesses his life slowly spiral out of control, he will call into question his definition of home, humanity, destiny, and what it means to truly belong.

Rated Teen just in case for occasional swearing. This story takes place shortly after the end of Season 2, and the main character is from an Earth where MLP never existed (in order to preserve proper characterization). Or just assume he's never heard of it, that works too.

The title is not an Evangelion reference, I was just inspired by the wording scheme.

This story is a sequel to A Stitch in Time

Having discovered the message left for her by Star Swirl the Bearded in the distant past, Twilight once again finds herself caught up in the middle of a struggle against forces far greater than herself. In order to even stand a chance she'll need to travel further and wider than she ever has, and forge some unlikely alliances with old enemies. All to bring down the powers that have manipulated and shaped her entire life, and retake control of her own future.

The conclusion of the Time Loop Trilogy, which began with Hard Reset
Available in Spanish thanks to dgs1993
Series TV Tropes page

This story is a sequel to Hard Reset

After the events of Hard Reset Twilight's life and mental well being are slowly returning to normal. Her recovery is cut short, though, when a letter arrives informing her that the time loop spell she cast is causing severe damage to space and time itself. In over her head, Twilight tries to summon anypony who will know how to fix it. The pony she gets is the last one she ever thought she would meet... and nothing like she expected him to be.

Available in Spanish thanks to dgs1993
Series TV Tropes page

Twilight isn't having a very good day. An experimental spell blew up in her face, an army of changelings is attacking Canterlot, and she just died. Yet somehow, it looks like it's going to keep going downhill from here.

Given the chance to correct what's gone wrong, Twilight swears she's going to fix all this even if it kills her. Which it will. Frequently.

Cover art by Pixel Prism
Spanish Translation
Series TV Tropes page

The tyrannical Shadow Stallion oppresses Equestria, coating the land in a thick layer of clouds, tightly controlling the population. Three children, the unicorns Celestia and Luna, along with a Draconequus, Discord, must live up to their fate. They must find the Elements of Harmony and take up their rightful place as Equestrias new gods and saviors.

Adventure and Friendshipping mix, intended to be a possible prequel to the show. Featured on EqD since January 09, 2012. Six Stars.

Anon comes from a universe that operates by kung fu movie physics and he's still able to function as such. Imagine every cheesy kung fu movie mixed into one story.

This was done as a collaboration between me, Bolding, Anonymous Assassin, Fugger, 8th Sin, and someone that didn't want to be named.

With the recent premiere of the Equestria Girls movie in Equestria, everyone is overjoyed at its success. Except for Spike, who doesn't like that fact he was the only character to be a dog instead of a human in the movie. Which leads to him calling upon a revolution for change on Equestria. Yeah... things blow out of proportion really fast.

Thanks to Bass21, Linkerman, and LDSocrates for pre-reading it! And thanks to jlm123hi for making the cover image!