First of the Savage Skies series.
After running afoul of timberwolves in the Everfree Forest, Fluttershy is saved by a mysterious young colt with a most unusual and disturbing feature. Realizing that he is alone, without anyone else to care for him, Fluttershy realizes that she must try to bring this lonely foal out of the forest and give him a life of love and friendship. The problem is that this colt's...unique qualities have made him more than a few enemies, including some who are closer to home than Fluttershy realizes.

Now with a sequel: The Promise of a New Day.
Now with a TV Tropes page.

"My name is Lyra Heartstrings, and you will not remember me. You won't even remember this conversation. Just like with everypony else I've ever met, everything I do or say will be forgotten. Every letter I've written will appear blank; every piece of evidence I've left behind will end up missing. I'm stuck here in Ponyville because of the same curse that has made me so forgettable. Still, that doesn't stop me from doing the one thing that I love: making music. If my melodies find their way into your heart, then there is still hope for me. If I can't prove that I exist, I can at least prove that my love for each and every one of you exists. Please, listen to my story, my symphony, for it is me."

Cover pic by Spotlight: askspotlight.tumblr.com

The Shaper is a smith of unparalleled skill, her creations the most sought after in the fallen world. When a pony named Lyra comes to her with a unique commission she has to put all her skill to the test to craft a weapon of great power. For Lyra's goal is not an easy one, and it is not just any weapon that can kill a Dragon.

A story inspired by this and this image, as well as this challenge by CDRW (whose fic A Still More Glorious Dawn Awaits is quite good).

When Ditzy Doo loses her job at Cloudsdale Mail and Freight, she gets a job at another shipping company... only to find out their definition of shipping has nothing to do with delivering packages! Desperate for income to support herself and Dinky, will Ditzy be able to make it as a pony matchmaker?

(Occurs between Seasons 2 and 3 of the show.)

Time in Ponyville has broken. Everypony is dealing with it in some way or another—except you. You're fine, somehow. Oh, and me. I suppose that's where things start. Let's be on with it then, shall we?

The stand-alone prologue to "Contraptionology!" In a world where forest fires (well, a forest fire) run(s) rampant, the fate of Ponyville – this week, at least – lies in the capable hooves of the greatest scientific genius ever to walk the surface of Equestria...

...Pinkie Pie.

Now with a Spanish translation by Spaniard Kiwi!

A Juggernaut, one of the most deadly foot soldiers on Earth, wakes up from cryosleep to find his ship crash-landed in a foreign location. With seemingly nobody surviving but he, the Juggernaut dons his armour for a final time and prepares to go out guns blazing.

When he makes it outside, he is confronted with something that will shake his very foundations of life.

Written for a friend that has supported me since the beginning.
Cover image thoughtfully recommended to me by Ironwolves21.

Following the events of "Traveler," Twilight goes to Canterlot to deliver her report on what has transpired since the Doctor's arrival in Ponyville directly to Princess Celestia. She leaves the Doctor in Spike's capable claws, asking him to show Equestria's newest arrival around town while the TARDIS rests and repairs itself from the trials of the previous day.

Although at first distraught at being stranded in the seemingly serene township of Ponyville, the Doctor finds himself reexamining his initial assumptions about the ponies, the land of Equestria, and his compulsive need to travel when he is confronted with the miraculous, impossible events surrounding Ponyville's resident party mare: Pinkie Pie.

The Pinkie Conundrum is the first in a series of continuity branching off from the foundations established by the Doctor Whooves stories: Number 12 and Traveler by the very talented Squeak-anon and all references to these two works of fanfiction is credited to him. Also, while this is a separate continuity from any future works by Squeak-anon, it is strongly recommended to read these two fictions before reading Pinkie Conundrum.

This work has been developed and published with permission and blessing of Squeak-anon, my original inspiration.
Doctor Whooves Intro posted on YouTube by: Cshep99
Cover art provided by FoxInShadow from deviantart.com
Proofreader, Editor and Number One Assistant: 2dextreem

If you enjoy this story as well as my other works, please leave a comment. Constructive critique is encouraged as well as any questions or remarks that may occur.

Cloud Kicker might just have the wildest life of any pony in Equestria. Marvel at the insanity that is her life, and laugh at the suffering of her poor beleaguered best friend, Blossomforth. And maybe, just maybe, there's more to her than just the lovable sex maniac everypony thinks she is.

This is a semi-sequel to "The Incredibly Dense Mind of Rainbow Dash." Not really a proper sequel, since it's focused on Cloud Kicker and Blossomforth instead of Rainbow and Pinkie, but it's in the same continuity. So I guess that makes it a follow-up-side-quel story. Or something. You don't need to have read "The Incredibly Dense Mind of Rainbow Dash" to read or enjoy this, but you ought to read it anyway, just because.

TvTropes Page

The central story of the Winningverse.

We got a tag for Cloud Kicker, but Blossomforth still deserves one too.

Rainbow Dash struggles to figure out why Pinkie Pie keeps acting weird, and seems so happy about spending Hearts and Hooves with hanging out with her, while also puzzling over the fact that Cloud Kicker and Blossomforth seem to be going out of their way to help the two of them enjoy the day.

Cloud Kicker and Blossomforth need to have their own tags, because they're awesome characters who deserve to have more stories written about them.

Has a semi-sequel-follow-up-side-story:"The Life and Times of a Winning Pony."