This story is a sequel to The Rainbow's Surprise

On the day of Fluttershy and Rainbow Dash's wedding, Princess Celestia left Twilight a message saying that she should prepare herself if something happens. The next morning, Twilight awakens to find that all of Ponyville has succumb to a blinding fog. She must now travel a monster-filled town in search for her teacher and friends and try to return Ponyville back to the way it was.

Pinkie Pie is being tormented by horrific nightmares. Unable to deal with it by herself anymore she seeks out Twilight's help, but will it have been the best decision when she finds herself alone in an abandoned, fog filled Ponyville?

Sequel: http://www.fimfiction.net/story/4676/Too-Shy-for-a-Rainbow

There have been a LOT of high-quality readings of Silent Ponyville, but this one is my personal favorite:
https://www.youtube.com/playlist?list=PLGh01rbB4o3xoSV7a6Omc-UJROXHRZ1Hv

Ever since the Battle of the Bands, Sunset Shimmer has been writing letters to Princess Twilight Sparkle telling of what she has learned about friendship. One day, Twilight gets a peculiar letter and exciting news: Sunset Shimmer is coming to Equestria! Twilight and her friends already have lots of plans for when she gets here, but Sunset has something very specific she wants to do first: something that is long overdue.

*Cover image drawn by shutterflyeqd*

Edited by: FabulouslyCynical

Starswirls spell was finally completed thanks to Twilight Sparkle. But was it really supposed to do this?
In a world where Twilight was never born, she must throw away everything she once knew about her friends and Equestria. She must unite the elements again and take down the evil tyrant that now rules.

That way everything goes back to normal, right?...

This story is a sequel to My Little Zombie: Friendship is Dead Season 3

"I am Zeinvolfe, but ozers pronounce it Zeinwolfe. Ha, zey speak funny. Anyvays, I am one of ze few survivors of ze zombie epidemic. I follow Princess Sparkle and Rainbov, who I trust ze most. Our goal? To kill ze one who did this to us. Ve vill. And he vill fall."

This story is a sequel to My Little Zombie: Friendship is Dead Season 2

"Doth thou wot what it's like to be truly high-lone? Our name is Princess Luna. We lost everything to the apocalypse. Our family is gone. . . forever. All we hast left is rage, ready to unleash on the undead scum that walk Equestria. And we're not truly high-lone, just barely alive. "

This story is a sequel to My Little Zombie: Friendship is Dead Season 1

"My name is Secret. There's not much to say about me. I work with Princess Twilight as her adviser and a member of the royal family. We have lived in the walls of Canterlot for about a year. But, something has been bothering me over that time. There is no way we are safe yet..."

Author: Nortes432
Editor: Victor Von Schneider

After several years spent amongst the dragons, Spike returns to Canterlot to take an entry exam at Princess Celestia's School for Gifted Individuals. His old friend is there to witness it, and she is not too happy with what she sees.

Twilight Sparkle and her fellow Elements of Harmony have faced down supernatural foes of the highest order, but sometimes the deadliest danger can come from places one would least expect. As Twilight is forced to bear a devastating secret, her efforts to keep the Elements together may well tear them all apart.
The plotline of the thrilling Pony Psychology Series continues with an exploration of deception, despair and Discord.
This series takes place between Season Two and Season Three.
Secrets and Lies shares the Pony Psychology Series TVTropes page.

One by one, Twilight and her friends must come to terms with the consequences of being the Elements of Harmony.

These stories take place in the intervening time between Season One and Season Two,
with the exception of Ditzy Doo: Muffins, which takes place early in Season One.

The series continues in the sequel, Secrets and Lies.

Pony Psychology has a TV Tropes Page.