The first story in The Journey of Graves.

Ponyville is getting ready for the arrival of Princess Celestia's marshals, elite of royal guard and travelling heroes of the people. But in all the hustle and bustle of party preparations, a lone traveler slips into town, a young man with business concerning Twilight Sparkle. What that business is remains to be seen, but you can be sure Ponyville won't make it easy for him.
After all, where would be the fun in that?

Okay, I don't know if anyone can hear this, or read this, or whatever, but I'm trying my best to use Pinkie Pie's legendary fourth-wall-breaking powers to try and get a message out.

If you can hear this, I need help. I'm in Equestria, and man, this is strange. But I'm also stuck in Pinkie Pie's body, for some reason.

Yes, it's just as weird as it sounds. And now, I need your help... because all the ponies in this town think I'm crazy!

Princess Twilight Sparkle discovers a centuries-old mystery hidden in the Royal Archives. Her investigation leads through layer after layer of deception and misdirection, setting her hooves on a path that seems to be leading to a mysterious secret. Along the way, she learns that some friendships can be very, very strange.

Book 1 of the Alicorn Adventure series.

AUDIOBOOK by VisualPony
Featured at the Royal Canterlot Library
TV Tropes Page (Courtesy of Sandtalon)
Goodreads Page (Courtesy of Facedeer)
Equestria Daily Page

WARNING: Major spoilers in the comments. Takes place several months after the end of season four. (Not a Da Vinci Code crossover, BTW!)

Do you see a dark tag? No, you don't. Not dark. Well, okay, there are a couple of dark-ish bits, but that's all. Not enough to warrant a tag. Speaking of tags, there really ought to be "Badass Twilight" and "Friendshipping" ones.

Sequels and side-stories (and more) can be found here Offprint and AO3, and a hardbound two-volume set of all that can be ordered from The Ministry of Image.

My editor for the first edition of this story was Gogito, and I can't thank him enough for all the hard work he did. My editor for the revised version was PresentPerfect, and he did a terrific job of getting the story into excellent shape.

Applejack, Rainbow Dash, and Rarity brave the last minute shopping crowds of Manehatten to get the Cutie Mark Crusaders the perfect gifts for Hearth's Warming Eve.

Sometimes things just don't work out.

When Twilight Sparkle was just a kid, her best friend was a girl named Sunset Shimmer. Though their friendship had a bit of a rocky start, they quickly became inseparable, no matter how much everyone thought of them as ‘weird’. They were there for each other.

Were.

Years after the tragic accident that tore them apart, Twilight is determined to move on from her loss, and she sets off on an independent research project to investigate the strange happenings at Canterlot High. Little does she know that she will soon come face to face with what appears to be a literal ghost from her past.

Coverart by Kare-Valgon. Chapter illustrations by Zorbitas.

Edited and Pre-read by Dubs Rewatcher, r5h, and Kalan.

Takes place after Rainbow Rocks, but was written before Friendship Games and does not take it into account.

Chinese translation

Print copies now available.

This story is a sequel to The Wandering Physicist Adventures

FAQ for this story: FiM Fic version (updated two weeks after every new chapter) and GDoc version (constantly updated and edited)

Over a thousand years ago, Discord killed Princess Celestia before he was finally defeated. Five hundred years ago, Queen Luna was overthrown and had to lead a brutal rebellion to reunite Equestria and give birth to the New Lunar Republic. Twenty years ago, an alien invasion was repulsed at the expense of all but one of the Elements of Harmony. A year ago, Queen Luna's oldest daughter disappeared without a trace, possibly never to return.

The world has recovered from all of the tragedies of the past and is more prosperous, more advanced, and more peaceful than ever. Ponies, Griffins, Zebras, Dragons, Donkeys, Buffalo, and all of the other sentient species of the world love and tolerate one another but under the surface, tensions between nations are brewing.

When the Elements of Harmony start finding a new masters, the other nations start fearing that Equestria is planning military strikes. With their mentors guidance, the new Elements of Harmony have to unite and avert the collapse of the New Lunar Republic before it is too late.

Author's note: This is a side story to the universe introduced in The Wandering Physicist Adventures's Crossroads, Origins, and Letters from Home. Knowledge of that other series is not required, but those stories provide a good basis for extra information about this series.

Character References: On tumblr - On Deviant Art - Warning: Contains spoilers and peanut products.

Image source by ponyKillerX. I would love to have some unique art for this series, but my art skills are not that good nor do I have the funds to commission one. *sadface*

This story is a sequel to The Wandering Physicist Adventures

Seven years after the wedding on Twilight Sparkle and James Wanderer, life in Ponyville is pretty normal.

Apple Bloom runs the library for Twilight Sparkle. Applejack and her son have a happy family life. Sweetie Belle attends music school in Canterlot, living with her sister in Rarity's new shop. Scootaloo works full-time for Rei, who is finally married to Inkie, while training to join Rainbow Dash as a Wonderbolt. Fluttershy and Sunshine raise two lovely foals of their own. Pinkie and the Cake twins work to make everypony in town happy. Trixie, Stormy and their daughter travel the world performing. Just normal life for everypony.

One day, The Master shows up in Ponyville to torment his old 'friend', The Wandering Physicist. Instead, he ends up harassing everypony TWP cares for as a distraction while he tries to conquer Equestria. Everypony will have to keep their wits about them to survive the threat of the deranged Time Lord and prevent him from destroying the land they love.

Sequel to The Wandering Physicist Adventures - Written in a manner so that all necessary backstory is covered within. No real need to read TWP, but it is appreciated.
Prequel to Starlight Chronicles

Character References: On tumblr - On Deviant Art - Warning: Contains spoilers and peanut products.

This story is a sequel to Shipping and Handling

Magic is limited only by the strength of the mind and the passion of the heart.

After the events of "Shipping and Handling", young Dinky Doo sets off to begin her first term of study at the most prestigious magic school in Equestria, Celestia's Academy for Gifted Unicorns. The adventures that await her there will exceed even her wildest expectations, and a cast of colorful new characters will be by her side to share in them.

(This story is the sequel to "Shipping and Handling". It's highly recommended you read that one first!
Occurs during Season 3 of the show: After the Crystal Empire but before Alicorn Twilight.)

When Ditzy Doo loses her job at Cloudsdale Mail and Freight, she gets a job at another shipping company... only to find out their definition of shipping has nothing to do with delivering packages! Desperate for income to support herself and Dinky, will Ditzy be able to make it as a pony matchmaker?

(Occurs between Seasons 2 and 3 of the show.)

Spike's eleven year nap is interrupted by a little filly in his treehouse...

Third place winner in The Writeoff Association's June event, "A Matter of Perspective"

Now with a Spanish Translation, by SPANIARD KIWI.