This story is a sequel to Doctor Whooves Episode 7: The Good, the Bad, and the Derpy

The Doctor, the Mane 6, Derpy, and Spike travel to 4376 and find themselves on a luxury spaceship called the Queen Philippine, which is currently on its maiden voyage. What starts off as an interesting adventure turns into a fight for survival when the ship loses power and becomes host to some unwanted passengers.

This story is a sequel to Doctor Whooves Episode 8: Maiden Voyage

The TARDIS brings the Doctor, Twilight, Derpy, and the others to the Griffin Kingdom in the year 1021. Here they meet a 38-year-old Rainbow Dash training for the Gailenean 1000. Meanwhile, a third Rainbow Dash from an alternate reality appears but with much darker goals in mind.

This story is a sequel to Doctor Whooves Episode 9: Triple Rainbow

It's been a month since the Mane 6, Derpy, and Spike started traveling with the Doctor. Things suddenly take a turn for the worse when a foil from Twilight's past mysteriously appears in the TARDIS and they all end up trapped in a seemingly-abandoned asteroid base that has a bad infestation.

This story is a sequel to Doctor Whooves Episode 12: A Dalek in Celestia's Court

The Doctor has been living in Ponyville for several weeks now and Hearth's Warming Eve is just around the corner. However, the peace is shattered when a mysterious stallion from another dimension named Clockwork appears. As the a dark nightmare wreaks havoc, Twilight is forced to examine her true feelings for the Doctor and Clockwork must face the fate of his wife, Twilight Sparkle.

This story is a sequel to Doctor Whooves Episode 6: A Ponyville Invasion

With Thalia continuing her invasion of Ponyville, Derpy and the others find their last chance at stopping her in the hooves of a future regeneration of the Doctor. Meanwhile, the Doctor teams up with an ally from the past to rescue Twilight and Rainbow Dash and ultimately save the town.

This story is a sequel to Doctor Whooves Episode 16: A Country at War

The Equestrian and changeling armies have suffered greatly from the battle. Esmeralda is ready to end the war once and for all and sets her sights on the last safe haven in Equestria: Canterlot. As Donna ventures into the Changeling Castle to find Esmeralda's greatest weakness; the Doctor, Twilight, and Angie take charge and Angie goes beyond what she ever expected of herself.

This story is a sequel to Doctor Whooves Episode 17: Angie the Great

Upon returning to Ponyville, the Doctor learns that there's a new mare in town by the name of Colgate and that she desperately needs his help. When a chance encounter leads to Twilight and Pinkie Pie getting trapped in the past, the Doctor will have to solve the mystery behind Colgate's curse as well as learn her connection to an ancient and lonely creature.

This story is a sequel to Doctor Whooves Episode 13: Clockwork and the Doctor

The Doctor, Twilight, and Derpy head off to the Doctor's home dimension, but something goes wrong and they instead end up in a dimension where they were merely fictional characters in television shows. Things get even more complicated when they end up separated at a certain My Little Pony convention alongside two fans and a mysterious figure with an odd arsenal of powers appears.

This story is a sequel to Doctor Whooves Episode 10: The Magician and the Angels

The Doctor heeds to Applejack's request and has the TARDIS take them to July 6, 996. It quickly becomes apparent that Applejack has a plan to change a certain event that occurred on this day. But her choice to attempt to change her future could very well lead to the destruction of the entire universe.

This story is a sequel to Doctor Whooves Episode 3: Aliens Among Us

After leaving Eugora, the TARDIS takes a giant leap through time and sends the Doctor and Twilight to Canterlot in the year 987. Here they come across an 8-year-old Shining Armor who is dreaming of becoming a royal knight. However, a devious villain has set her sights on the young unicorn and it's up to the Doctor and Twilight to save his magic, his life, and his future.