The Sequel to 'Faith and Doubt'.

It's been two months since the changeling attack and Shining's almost-wedding and much has changed. Twilight Sparkle is now an alicorn and has left Equestria to master her new powers. The sixth element of harmony, the corrupt abstract Doubt, has been reborn in his original form: Faith. He, along with Spike, have gone with Twilight as she sought to heal after the betrayal by her friends and family.

But Twilight's return to Ponyville will not be a happy one; in her absence her friends Applejack, Fluttershy, Rarity, Rainbow Dash and Pinkie Pie have been turned into alicorns themselves and the embodiments of their elements. They have seized power and now rule Equestria with iron hooves, using banned magic to turn their friends and family into zealots that obey their every command.

To save Equestria, Twilight will have to do the unthinkable: form a rebellion and declare war on her friends. But will she be willing to make the tough decisions... even if it means choosing between friendship and freedom?

Everything is bad in large doses.

Thank you to all that got this story featured!

The TVTropes page for Faith and Doubt/The Abundance can be found here: http://tvtropes.org/pmwiki/pmwiki.php/FanFic/FaithAndDoubt

Cover by the wonderful FerGarcia220!

Twilight Sparkle's Harmony Project is the culmination of her life's work. The only thing left is for everyone to be gathered, so that all of Equestria can join together in Harmony.

But now that success is staring her in the face, Twilight begins to have doubts. Fortunately, she has a friend like Discord, who is only too happy to lend a paw to a friend in need...

Editing work courtesy of NorsePony.

The past always comes back to haunt the present, there is no escaping the inevitable. For decades, Celestia has kept a secret from her student. A secret she made out of pain, and through pain will be revealed for all to see; for Twilight Sparkle is the secret daughter of the Sun.

Now, there will be consequences.

Consequences, they come in all shapes and sizes for every decision. For every action there is an equal and opposite reaction. These words are lessons that Princess Celestia should know, bits of wisdom she practices in her rule of Equestria. How is it then, that when faced with a decision, she chooses the one that would inevitably bring the most pain? How is it that she couldn’t bear being recognized as the mother of her child? And why? Twilight Sparkle is about to find out.

Disclaimer: (I do not own the picture; Title Picture owned and designed by KitsuneHino; Source: http://mel-rosey.deviantart.com/art/By-my-side-364777307) (I do not own any of the characters, places, events, etc. outlined in this fanfiction, MLP FiM does under Hasbro, give them the credit.)

With Twilight Sparkle's coronation comes new dangers, not from the outside, but from within. To keep her safe, Princess Celestia is forced to turn to a single prisoner for help, Saber Alabaster, an assassin. If Saber can gain Twilight, and the new temperamental captain's trust then they just might survive what's coming.

All characters are Humanized.

Cover art: http://www.deviantart.com/art/Radan-the-rogue-483057845
Featured on: 9/26/16 HOLY SHITZ!

Luna is sent, along with young Twilight, to old Neighpon to try and quell the feuding warlords with diplomacy. And, if that fails, reduce the bloodshed as much as possible. Turns out that Luna is the kind of mare that likes to jokingly flirt and see how far she can go to make the other uncomfortable.
Boy is she in for a surprise.
---
So the inspiration for a lot of aesthetic and naming is primarily Japanese, however I'm taking from all of the orient and I'm being fairly loose with the accuracy. Translations and terminology won't be exact, don't expect a historical rendition of feudal japan in pony form here fellas.
Will update tags if more of them become relevant.

Changelings and ponies had always been natural enemies of each other, especially with the crystal ponies when they were around. Why wouldn't they be? Changelings were like parasites, feeding off the love that ponies gave off and driving them to illness.

However, Changelings had begun to decline. What started out with as seven hives have diminished down into three, all of which had gone into hiding so well that most ponies didn't know what changelings even were. Even Celestia had not seen one for quite a while, a long feat for an immortal pony.

Until she found a nymph. A new Changeling Queen.

Unable to find it within herself to abandon the changeling, Celestia ends up taking the nymph back to Canterlot under guise as Twilight Sparkle. The plan was simple; find the hive that Twilight belonged to and return her back to be raised with her race.

Of course, despite everything she learned through her long life, she had forgotten that things were never that simple.

For starters, she did not anticipate herself to grow fond of Twilight as time began to pass, or to beam in happiness when Twilight began to refer to her as mom.

Many Many Thanks to my Pre-Readers: Rewrite and Doctor Disco (Welcome to the Team Doctor!)

Celestia is still haunted by her own personal demon. Luckily for her, she isn't alone.

Her sister will always be there for her.

Cover art by Nemo2D on Deviantart.
Edited by Dreams of Ponies.
Additional proofreading by B_25 and pre-reading by Not Enough Coffee.

Luna's homecoming tour has taken her to every major city in Equestria. Every city but one. Lunangrad, the frozen sentinel of Equestria's forbidding north, and Luna's ancient sacred center.

Twilight, along for the ride, finds herself drawn inwards towards some horrible secret as the world she knows trembles before some great revelation. The Pilgrimage has begun.

A scientist seeks growth and despises stagnation. Five years in Ponyville has been long enough, and Twilight Sparkle is searching for an out. She jumps on the opportunity to travel under Princess Luna's personal tutelage. Things invariably go wrong.

One day, Twilight notices something strange : the princess Celestia she is looking at has got no shadow.

Twilight's curiosity then forces her to figure it all out.
Curiosity is such a bad thing.

She should have stayed out of this one.