Two thousand years after the return of Princess Luna, Equestria's technology and magic has advanced far enough that the once far off dream of faster than light travel is now a reality.

And that reality is the ES Harmony, the pride of its designer, Princess Twilight Sparkle, and Equestria's first FTL capable starship. It is due to make its maiden voyage to travel further than anypony before it.

And yet when they receive a distress call from origins unknown, this ship's maiden voyage will become one the crew will never forget.

(Featured on 31/7/2016)
(Not a strict crossover with Star Trek, but here Equestria Girls takes place in the Star Trek Universe)

Harry Dresden, Chicago's only professional wizard, accidentally travels to Equestria after being attacked in the Nevernever. Twilight is none too amused with their newest 'guest', but trouble is brewing. Somepony is planning something sinister and the mane six may need Dresden's help however little some of them want it.

Story Image by: Lynxgriffin
Cover arrangement by: Novel Idea

Until yesterday, my life was no different than anybody's. Go to work, pay the bills, sleep. Today, I woke up to a world without humans. The streets are empty, the power grid is running down, and not another soul is in sight. That might not be the worst thing, if I wasn't also a pony.

Where is everyone? Why is this happening to me?

Will l stay sane long enough to starve?

This story now has a hardcover! If you'd like one of your own, you can grab it here: https://starscribe.net/

Now with a TVTropes page! Для тех, кто предпочитает русский язык, перевод можно найти по ссылке.

Note To E-Reader users: This story contains illustrations in each chapter, which will be lost in the standard fimfiction chapter export. The generous Phoen1x took the time to produce an epub version with all the illustrations intact, which you can download here.

A huge thanks to Zutcha for all his hard work on the art of this story. Also a huge thanks to my editors Two Bit and Sparktail, for tolerating my half-written crap.

This story is a sequel to Stardust

Times are changing for Equestria as Twilight’s return brings with it news of people and cultures from beyond the peaceful world everypony knows. Aid and volunteers are freely offered to help the besieged humans of Earth because every Equestrian knows that’s what good friends do. Unfortunately, making friends can also have the unintended consequence of making enemies.

When the monsters besieging the humans strike at Equestria with a level of brutality not seen in over a thousand years, the cry for help is sent to all the kingdoms of the world. Honored allies step forth to fulfill ancient treaties and oaths. Enemies, old and new, bury their grievances. An alliance never before seen in Equestria will be created to combat the monsters from the void.

And because of these events, a grim but welcome sibling to the XCOM project is born.

(XCOM/FiM Crossover)
(Sequel to Stardust, which I recommend reading before starting this. Fortitude Amicitia and Broken aren't required reading but are supplemental to the storyline)
(Gore tag for blood and violence)
(Alternate Universe tag because of the divergence from canon that Stardust has caused)
(Uses elements of Season 4)
(Coverart produced by the amazing Carnelian!)
(Many thanks to Arzoo, BradTheBrony, Vandenbz and Setokaiva for prereading!)
(As of 03/07/2016, the prereading team consists of Arzoo, BradTheBrony, Noble Cause and Metallusionsismagic!)
(Complete with it's own TVTropes page as part of the Stardust continuity. Could use some updating!)
(Character tags will be added as chapters are added!)
(Featured 5/12/2014! Thanks folks!)
(Possible spoilers in the comments! BEWARE!)

Isolated from her friends and taken prisoner in the middle of a war, Twilight must deal with the very real dangers of being percieved as an enemy as well as the nightmares of her arrival on 'Earth'. Can she overcome her own fears and the fears of her captors? Will the wayward unicorn's assistance be a boon or a curse to the 'humans?' Most importantly, will she ever find her way home?

"In short, it's a story of friendship and plasma rifles, with the emphasis on the friendship. The characters are well written, the XCOM setting is fleshed out very well, and the story is compelling. If you love XCOM, you'll love the story, but even if you've never heard of it, it's more than worth giving the first 3 chapters a read.

There's excellent action later on, but the real strength lies in the collision between the friendly and naive world of Twilight Sparkle and the desperate world of humans fighting a losing war for survival and willing to do anything to turn the tide."

--Arzoo

(XCOM/FiM crossover)
(Cover art commissioned by a friend and created by the magnificent FoxInShadow!)
(Original cover art by the amazing Carnelian can be viewed here!)
(Gore tag for blood and some violence)
(Many thanks to the studius OminousTen, Arzoo, xXFluttershyForeverXx and finally Setokaiva for giving my rambles a once-over)
(Now with it's own TV Tropes page! Get to tropin' folks!)

When Celestia went on sabbatical into the west, she promised Twilight it would be only a couple of months. A year and a half later, the sun resists control, the country is in ruins, and her teacher is lost in the wilds. Twilight has become the apostate, her faith in her teacher and her teachings waning. In the wake of tragedy, her resentment blossoms into fury and she vows that something must be done. Shadows gather around Canterlot, and old things that should not have been awakened are on the move. The Student goes west, her hope restored by friendship and righteous fury.

The night, at long last, is passing.

Everything changes for Twilight Sparkle and her friends when a mysterious extraterrestrial ship crash lands in Equestria. When Twilight messes around in the ship's systems with her magic, she ends up transported to an alien world unlike anything she imagined: a box canyon in the middle of nowhere.

To get home, Twilight must enlist the help of the eccentric Red and Blue soldiers that live there... if she can get them to stop bickering first! Additionally, she finds herself being pursued by the enigmatic military agency known only as Project Freelancer. Back in Equestria, all is not well for Twilight's friends as forces involved with the crashed ship make themselves known. Reds, Blues and ponies will all have to work together to discover the mysterious connection between Equestria and Project Freelancer.

A crossover with Red vs Blue. Written with the intention for the story to be followable without having watched the series. (just don't expect to get all the references).

Now with editors! BradtheBrony and Rough_Draft.

I made a blog post explaining things. You should read it.

TvTropes Page.

Yes, the black and white pegasus who steps out of the glowing mirror seems very nice, but Pinkie's twitches tell her that this is her evil twin. And when Pinkie makes her own journey through the mirror to meet even more Pinkies and even more Pies, well, that just means more fun! Doesn't it?

I've been haphazardly planning this since March 12, 2011, the day my story "Pinkie Pie's Evil Twin" went up on Equestria Daily. A year and a half later, a little rewriting has turned it into the first chapter here, and the rest will follow in due course. Twelve chapters, maybe? I guess we'll all find out together!

Apple Honey, who runs a farm supply and repair shop and writes the Ponyville Express in her spare time, has a perfectly ordinary day.

A Pony Planet story

This story is a sequel to Days of Wasp and Spider

Believed dead by their creators, the ponies that will become Celestia and Luna have broken their mental conditioning and escaped into the wilderness. Here they plan the revolution that will free all ponykind, knowing that it is only a matter of time before their ruse is discovered.

Back in their underground arcologies, the ponies' erstwhile masters deal with the consequences of the escape, all the while unaware that something lurking at the bottom of space-time wants them all dead.

A Soot-Covered World, book 2.
Canon species only/no humans.
This story has nothing to do with the Holocaust.
Art by InLucidReverie, used with permission.