In every event, there are a million offshoots and effects, none really able to be fit into a normal narrative. Here is a collection of one-shots and mini-arcs spun out of The Elements of Harmony and the Savior of Worlds, so knowledge of that series will help immensely. Although I will do my best to make it as accessible as possible.

NOTE!:
All side-stories so far take place after the end of The Elements of Harmony and the Savior of Worlds.
The cast will be varied, as will be the stories, but all are canon.

Chapter One: A Picnic by the Lake: Celestia, Luna and Twilight entertain a guest who is more than meets the eye.
Chapter Two: Time Enough for All: The Doctor has spent nearly nine hundred years in Equestria, most it an extended vacation. But news of giants in Ponyville draw him out of semi-retirement.
Chapter Three: Contact Part One: Old Memories: Chip delivers the Princess' message to President Abernathy, which stirs old memories.
Chapter Four: Contact Part Two: Meetings and Greetings: Equestria makes formal contact with Earth, and an old mystery is finally put to rest.
Chapter Five: Family reunion Part One: The Best of intentions: Dinky sets out to reunite her father with his closest friends, roping her sister and the rest of the Cutie Mark Crusaders on a journey across time and space.
Chapter Six: Family Reunion Part Two: Memories: The TARDIS arrives at Earth, reuniting the Doctor with his past.
Chapter Seven: Shape up or Slaughter Out!: Shining Armor gets some help from an old warhorse to finish what he started with the Royal Guard.
Chapter Eight: How Christmas was Saved... Sort of: A short tale of how Santa Claus was saved one Christmas Or Megan had too much eggnog.

Trope page for The Elements of Harmony and the Savior of Worlds. Story listed there as well.

Equestria Daily page: A man can dream...

Things are hard in Ponyville for Fluttershy and Discord; mainly because of Discord. But when magic starts to go on the fritz and eventually starts failing altogether, it's up to the main six and the Draconequus to find out what's causing it and, more importantly, how to fix it.

This would be a lot easier if anypony trusted the King of Chaos to begin with, but with bigger problems on the horizon, some things will have to wait to be dealt with. Like trust. Or loyalty. Or friendship.

Of course, sometimes what we think isn't important to deal with right now, is exactly what's needed to prevent things from getting far, far worse.

This story is a sequel to The Irony of Applejack

Warning: this story is a sequel. Therefore, it is highly recommended that you read the prequel first before continuing!

Over half a year has passed since the changeling attack on Ponyville, and Applejack would like to think things have finally settled down. Much has changed for the young changeling, and all of Equestria in kind. The new district in Ponyville proves that, along with the town's many new residents.
But there is much the young queen does not yet know about being a changeling. Some things, she will learn, can be chosen, while others will be chosen for her. With new allies and enemies emerging all around her, Applejack must discover what it truly means to rule before the choice is taken from her forever, and the history of the changelings repeats itself, once again...

Image provided by Heilos.

In the middle of the night of 1986, a twelve-year-old girl wakes up to find an armored pegasus underneath her bed. The pegasus suddenly leaves, but not without the little girl following him back to Equestria. There she finds Princess Celestia when she asks the little girl what her name was, she nearly goes into shock.

"It's Lauren," she said. "My name is Lauren Faust."

Update: Proofread by Fort Impression and Airchi. And a huge thank you to SecrretBrony01 for finally getting this edited fully.

I also want to thank MrAquino, FanficFanPony and Starburst Gleam for helping me keep this story moving with their helpful suggestions. And a tremendous thank you to Lotus Moon for volunteering to read this on YouTube from beginning to end.

When Princess Celestia calls Princess Twilight over to Canterlot to 'talk', Twilight knows something's up. She brings her friends, but Celestia requests and audience with Twilight. Alone.

Celestia explains about the great alicorns of old, and how an alicorn's spirit is different from other ponies'. Alicorn spirits live forever, but they need a host once their original body dies.

One of the hosts were in that room.

Follow Princess Twilight as she goes on a quest of self discovery... to defeat the greatest villain of them all.

Except for the occasional adventure, the ponies' lead pretty dull lives. Luckily, a certain God of Chaos wants to change that. He's got a story planned out for each of them and knows exactly what he wants them to do, say, and feel. But ponies aren't always the most cooperative of creatures, are they? Sometimes they just insist on writing their own stories! How can Discord deal with a group of equines who, despite the author's plans, just won't stick to the script?

Note: Based on "The Stanley Parable", an ingenious adventure game. If you haven't at least seen a little footage of the game, you might not entirely understand this story. I suggest looking up the game (you don't have to buy it, just learn a little about it) before reading this. It isn't 100% necessary, but if you're confused about any parts of the story, I highly suggest finding out more about "The Stanley Parable".

Megan Richards is a normal, everyday wife and published author of 'My Little Horsey'... however the tales she writes about aren't fiction, but stories from her past. She thought she put the world of ponies behind her, but sometimes the past has a habit of catching up with you...

G1 meets G4 in a hopefully epic tale of the past, the present and the future.

I own nothing, also, minor cameos from other Hasbro properties such as Jem and the Holograms, Transformers G1 and GI Joe.

Cover image made by the very talented Egophiliac and from here.

fanfiction.net link!
Equestria Daily link... one of these days.
TV Tropes page
All the Tropes page

Sequel: The Conversion Bureau: United We Stand

Side-stories and mini-arcs not able to fit into the main narrative: Side Stories of First Contact

A three arced story that begins slowly as partially Comedy and Slice of life and rotates more towards Adventure and Dark in later chapters.

Some school fillies have to deal with school crushes. Others with bullies. Sometimes they have to deal with both. But no filly has ever had to deal with an Evil Tyrant being bound to their shadow and have the power to control their every action. This, of course, seems to be no big deal for Sweetie Belle who seems to even enjoy the stallion's company. Though the feelings aren't mutual. The small filly reminds the old king too much of a filly he used to know... Though it's strange the only place he'd seen her before are in these strange dreams of his. Recollections of a past he can't remember.

Perhaps Sweetie Belle will awake in him that version of himself before he was a Tyrant. Before he was labeled evil. A time from when he was a father. Perhaps she will help him forgive.

First featured on 9/4/2014!

The cover art was sketched by me and colored by the very talented Midnight Sonare

A quiet evening with Fluttershy turns into a nightmare when Discord finds Eris, his mother, at the front door; asking how his plans of causing chaos and disorder across the land are going.
Needless to say, Discord tries everything in his power to make sure she doesn't know he's reformed.

No, we're not talking about physics. We're answering Coolbauch's question of what happens if Graves and Rarity just friendzoned each other? Set as a non-canon set of stories in The Journey of Graves universe, we set the marshal free so he can get it on with all the fine ladies. Or lads. Whatevs.

Short one shots that come as they will. After all, you can't rush love.