It's been eighty-nine days since the Day of Darkness, and Twilight Sparkle is still on her own. Eighty-nine days since she talked to anyone other than herself. Regardless of how lonely she feels, she prefers the company of herself to the vicious "lurkers", as she calls them, roaming around outside of her library. Whatever friendly, loving creatures they were before the Day of Darkness, something changed them. Something created these insane creatures, and nothing, not even Twilight, can stop them. All Twilight can do is live — live to fight another day.

Many years ago, shortly before the birth of one Twilight Sparkle, Celestia, ruler of Equestria, found a small item in a forest. That item? An egg. Around the same time, in another place, Celestia, ruler of Draconica found something small in a forest. That thing? A pony.

Art(C)me
Ponies(C)hasbro
dragons(C) ?

The Cutie Mark Crusaders know that Babs Seed was bullied back in Manehatten, but how bad could things really have been? And how does Babs feel about returning to the city and the ponies who have hurt her the most?

(Note: to avoid confusion, the first few chapters of this story deal with past events that occurred before "One Bad Apple". I will add an Author's Note to the chapter that begins the "present" state of events and continues forward from there.)

Followed by Sweet Apple Anthology and Severed Roots.

Now with a TVTropes page! Thanks to vren55 for putting it up!

Rated Teen for some violence, language, and darker elements.

Dear Princess Celestia,

I'm sorry I haven't written in a while. Things seem to be falling through the cracks lately. Spike thinks I should go see the doctor, but...

Twilight Sparkle realizes that Rainbow Dash has been keeping a secret from her ever since the Mare Do Well incident. When she goes to confront her about it, she finds out more than she bargained for. And then Twilight reveals that she's been keeping something from her friends ever since the Royal Wedding. Now everything is out there; harsh words have been spoken and a once strong friendship hangs in the balance.

Can you make a rainbow just with sunlight and water? No magic required? With the help of the pegasus weather team, Rainbow Dash and Twilight Sparkle investigate.

An ordinary afternoon at Canterlot's Summer Sun Faire becomes extraordinary when a young filly gets too curious and Princess Cadence experiences every foalsitter's worst nightmare. This is how one Princess discovered there is more to Twilight Sparkle than she ever imagined, and realized she is truly anything but "a regular old unicorn."

EDIT: Featured on Equestria Daily on 12/31/12. It's a New Year's miracle!

Freed once again from his stone prison, Discord takes on a different approach to getting his revenge; by recanting his past with Celestia and Luna both to the Elements of Harmony.

As Discord tries his best to corrupt the ponies' faith in their seemingly flawless princess and her damaged sister by telling them the whole truth, Discord finds himself second-guessing his position in the rivalry. But what is it that caused Discord to flip the lid in the first place?

For almost a year now, Trixie has been sending letters to Twilight. The only problem is, Twilight hasn't gotten a single one... until today. But now that she has, Twilight is left with more questions than she knows how to answer. Fortunately, she has a plan. Unfortunately, she doesn't know if that plan will work.

Featured on Equestria Daily
Reading by: WhoLandon
Reading by: PonyFicsOutLoud

Princess Luna finds more than a friend in her sister's student, and Twilight Sparkle gets a chance to study the moon and stars far closer than she ever dreamed possible.

An ongoing series of slice-of-life snapshots. Expect a castle's worth of clop-free d'aaawww.

These stories are in continuity with The Rustic & The Romantic and If the Flight Suit Fits.

Now featuring cover art by the inimitable Cerraka (formerly xaztein / crenair)!

Almost all chapters originally written as separate entries for flash-fic blog Thirty Minute Ponies (TMP). I highly recommend a visit to TMP if you're looking for some of the best 1000-word gems in pony fiction. Many thanks to TMP for inspiring me to write!

Plan C - In which Cadance learns that Celestia is the chessmaster, and that her backup plans are the most fun of all.

Game, Set, Match - Twilight tries her hoof at arena combat. Victory or defeat, she's sure to end up a winner with this opponent.

Countdown - Luna swore she'd never do this again, but there's something about that little librarian from Ponyville that tests her resolve.

Twilight Hustle - Rarity's heard some steamy rumors about Twilight and gathers the girls to dish juicy gossip.

All the World’s a Stage - Luna had a wonderful evening with Twilight and sang her heart out about it. Oh, and she might have left the door open.

Every Morning After - Twilight and Luna shared a wonderful, magical night; unfortunately, immortal Princesses sometimes forget about thousand-year-old laws which could ruin the mood ever so slightly.

Names - Luna's had many more names and titles than "Mare in the Moon", and Twilight discovers which of them meant the most.

Great Minds Think Alike - Cadance and Celestia's plan for Twilight and Luna comes to a head, slightly off schedule.

Third Time's the Charm - Twilight's Nightmare Night costumes aren't cutting it. Now Luna's in town, and that may change her opinion on what makes a proper costume.

Monster - Ponyville's been through the ringer lately, but whose fault is it really?

Impossible - Luna's having a bad night, and Twilight came all the way to Canterlot to do something about it.

Early Observances - If you're going to interrupt Celestia's sleep, you'd better have a very good reason.

THAT Letter - Luna and Twilight have to tell Celestia how serious their relationship has become, and they decide to send a letter. Surely they couldn't disagree about how to make such a simple announcement - could they?

Your Turn - Twilight and her friends reveal some personal secrets, and Twilight's is life-changing.

Trembling Joyful Whispers- The Big Day is here for Twilight and Luna! Hear the congregation's comments as events unfold.

The Power Vested in Me- The Big Day is here, but Luna and Twilight are so very, very far from ready. Will their fears get the better of them?

Awkward - Twilight and Shining Armor have dinner with their parents along with Luna and Cadance. They'll probably wish they'd ordered takeout instead.

Absence - Luna deals with a thousand years of angst all at once; maybe she just needs a gentle helping hoof to make sense of it all.

You Were There - A quiet night between Luna and Twilight is almost derailed by a lesson in ancient mythology.

Between Sun and Moon - Luna reads a bedtime story with which she is all too familiar.

Postcards from the Edge - Twilight leaves to study abroad for three months; in her absence, Luna has a stack of mail to open.

Insert Princess T into Slot S - Twilight want to be Princess of Something. Careful what you wish for!

Ups and Downs - Newly-crowned Princess Twilight needs flying lessons. Careful whom you ask!

Amethyst Throne - Princess Twilight is pretty sure she's seen these petitioners somewhere before.