This is the story of the end. This is the story of the death of Equestria. It is the story of the reign of her royal majesty, Princess Twilight Sparkle of the Fading Sun.

The alicorn sisters are dead and Equestria has turned to Twilight Sparkle to guide it. However, just maintaining a dim sun a fraction as bright as her mentor's keeps the new princess near her limits.

Years have passed and Twilight Sparkle is sure of only one thing. Equestria is dying.

NOTE: Written before "It's about Time" in season 2. Everything after "Read it and Weep" was ignored throughout this story.

This story is a sequel to Tomorrow is Always a New Day

For each their own reasons, a group of ponies (plus one kangaroo) band together in order to travel to the distant city of Manehattan, a two months round trip journey. However when the weather takes a turn for the worse, the group of practically strangers must band together in a desperate fight to survive.

The fifth in a series started by The Kindness of Strangers

This story is a sequel to Imperfect

After Sweetie Bell is accidentally hurt by a strange object in Whitetail Wood. Apple Bloom and Scootaloo begin to investigate on there own, despite Applejack's repeated warnings to leave it alone.

A magical accident creates a clone of Lyra that's a little... different, however, when Lyra becomes sick, Bon Bon is left with a difficult choice. The life of Lyra, or the life of her clone.

Vinyl Scratch has travelled with Princess Luna to the far off land of South Island, the homeland of the kangaroos in order to return an ancient artefact to it's resting place. The two ponies quickly find themselves walking across the South Island Outback where they meet an old friend along the way.

This story is a sequel to The Kindness of Strangers

After being terribly injured by an explosion in the post office, Derpy Hooves is released from the Royal Hospital in Canterlot, however Ponyville is not the same, quiet little town that she left behind, and her life starts taking turns that she would have never imagined.

Putting the Pieces Back together is a sequel to The Kindness of Strangers, which can be found here: http://www.fimfiction.net/story/389/The-Kindness-of-Strangers

Twilight Sparkle is called away to tend to Luna when she falls ill. As Luna grows sicker and Twilight more determined to help the younger princess, she begins to uncover dark secrets about the elements, the alicorns, and her own past.

One by one, Twilight and her friends must come to terms with the consequences of being the Elements of Harmony.

These stories take place in the intervening time between Season One and Season Two,
with the exception of Ditzy Doo: Muffins, which takes place early in Season One.

The series continues in the sequel, Secrets and Lies.

Pony Psychology has a TV Tropes Page.

COMPLETE! NOW WITH SEQUEL!Diamond Tiara has moved away to Manehattan leaving behind a lonely and friendless Silver Spoon. Depression slowly sets in, but one Cutie Mark Crusader extends the hoof of friendship. The sequel The Spoon That Refused Polish

The Great and Powerful Trixie has fled from Ponyville because it's canon. Since this is a fan written story, she returns to Ponyville unintentionally and meets up with Twilight after collapsing on her doorstep. To spoil the first paragraph, both mares already harvest feelings for one another. Hilarity ensues as they try to live together by complete force of the author. Will they ever confess their feelings to each other? If they didn't then this wouldn't be much of a romance fanfiction now would it?

Picture by dw1482