The Metro tunnels of Stalliongrad shelter the last remnants of ponykind from the ravages of the Apocalypse. Beneath the earth, ponies struggle to survive against mutants, radiation, and each other. But when an unstoppable threat emerges from the darkness of the Metro, one pony must brave the shadows to save not just his home, but the very existence of his people.

This is the story of the end. This is the story of the death of Equestria. It is the story of the reign of her royal majesty, Princess Twilight Sparkle of the Fading Sun.

The alicorn sisters are dead and Equestria has turned to Twilight Sparkle to guide it. However, just maintaining a dim sun a fraction as bright as her mentor's keeps the new princess near her limits.

Years have passed and Twilight Sparkle is sure of only one thing. Equestria is dying.

NOTE: Written before "It's about Time" in season 2. Everything after "Read it and Weep" was ignored throughout this story.

Humans.

Truth or myth? Ancient lost civilization or just an old pony's tale?

No pony has ever seen one, and most haven't even heard of them. But Lyra knows that these wonderful creatures are more than just old legends, and she's going to find out... and possibly drive her roommate insane in the process.

Equestria is a land of magic and harmony, a peaceful realm ruled by immortal and benevolent monarchs. At what cost is this possible?

Following the discovery of a strange and powerful device, Twilight Sparkle is whisked away to the edges of a land she thought she knew so well. Here, surrounded by ponies whose very existences have been kept secret, she must contend with vicious enemies, hostile allies, and the truth.

Chapters 1-16 edited by KiltedKey

How would things be different if Twilight had never made it to Ponyville? Twilight Sparkle finds out just how different things could be when she is forced to travel to her own past while chasing down a mystery; a plot to erase Princess Twilight Sparkle from history.

Landing in a time just weeks after the one thousandth Summer Sun Celebration, she finds a world shrouded in an eternal night, where the Elements of Harmony were never recovered. Can she fix the things that should have, but didn't happen? Or is this Equestria destined to head down a different path?

Chinese Translation by Hell Organist

For almost a year now, Trixie has been sending letters to Twilight. The only problem is, Twilight hasn't gotten a single one... until today. But now that she has, Twilight is left with more questions than she knows how to answer. Fortunately, she has a plan. Unfortunately, she doesn't know if that plan will work.

Featured on Equestria Daily
Reading by: WhoLandon
Reading by: PonyFicsOutLoud

For almost a thousand years, the immortal Nightmare Moon has reigned over Equestria as Empress. To the average pony, Nightmare Moon is an overarching enigma whose rule is absolute and whose wrath is terrible. But to Twilight Sparkle, who as an orphan has never known her parents, the Empress is something else entirely. When the young unicorn is brought under the royal wing as an apprentice, she learns a great deal more about the supposed tyrant than she ever knew. But as Twilight is introduced to life with her new mentor, she is thrust into a world of political intrigue, conspiracies and secrets. Secrets that were never meant to be revealed. As allies and enemies plot against the very peace of the nation, will Twilight fall prey to the perils of her new position? Or will she prosper and find in Nightmare Moon the mother she never had?

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My eternal gratitude to my editor, LordOfTheWrongs, without whom Night's Favoured Child would not be the story it is today.

Now with added TVtropes!

Isolated from her friends and taken prisoner in the middle of a war, Twilight must deal with the very real dangers of being percieved as an enemy as well as the nightmares of her arrival on 'Earth'. Can she overcome her own fears and the fears of her captors? Will the wayward unicorn's assistance be a boon or a curse to the 'humans?' Most importantly, will she ever find her way home?

"In short, it's a story of friendship and plasma rifles, with the emphasis on the friendship. The characters are well written, the XCOM setting is fleshed out very well, and the story is compelling. If you love XCOM, you'll love the story, but even if you've never heard of it, it's more than worth giving the first 3 chapters a read.

There's excellent action later on, but the real strength lies in the collision between the friendly and naive world of Twilight Sparkle and the desperate world of humans fighting a losing war for survival and willing to do anything to turn the tide."

--Arzoo

(XCOM/FiM crossover)
(Cover art commissioned by a friend and created by the magnificent FoxInShadow!)
(Original cover art by the amazing Carnelian can be viewed here!)
(Gore tag for blood and some violence)
(Many thanks to the studius OminousTen, Arzoo, xXFluttershyForeverXx and finally Setokaiva for giving my rambles a once-over)
(Now with it's own TV Tropes page! Get to tropin' folks!)

It is the year 2038, and the Earth is slowly being consumed by a space-borne monstrosity dubbed the Black Tide, which is using nanotechnology to remake the planet into something hideously alien.

Erin Olsen works for Project Harmonics, humanity's last-ditch effort to find a new world before the Tide can wipe them out. But when that world is found, and it turns out to be occupied, Erin will need to find the courage to face the unknown in order to save the inhabitants of both worlds.

(Many thanks to Easteu for the fantastic cover image for this story!)

Now with its own TV Tropes page

There is now a follow-up to this story: Sunflower - Side Projects
Sequel: Project Sunflower: Harmony

Twilight looked over to her dear mentor, Princess Celestia, and found she had once again fallen asleep mid-lesson. Her intense debate on awakening the princess was cut short when the decision was taken out of her hooves.

“Huh? Oh. Twilight, I am so sorry for falling asleep again. I think we need to reschedule this for tomorrow morning.”

Twilight nodded. After all, Princess Celestia was obviously overworked. If only there was something she could do to help.

Now with a dramatic reading courtesy of DRWolf.
Additionally, there’s a Spanish translation by Spaniard Kiwi over on Deviant Art.

Current Episode: Season Zero – Episode One
Next Episode: Twin Twilights

Art created from images by Tim015 and ShilaDaLioness.