This story is a sequel to Doctor Whooves Episode 15: The Christmas Ponies

The Doctor, Twilight, and Derpy decide to take Donna to Equestria. However, they accidentally end up in the year 56, where Equestria is currently caught in a bloody war with the newly-founded Changeling Empire. When Derpy and Donna are taken captive, the Doctor and Twilight must team up with a hardened Celestia and a simple farmmare in order to stop the merciless Queen Esmeralda.

This story is a sequel to Doctor Whooves Episode 16: A Country at War

The Equestrian and changeling armies have suffered greatly from the battle. Esmeralda is ready to end the war once and for all and sets her sights on the last safe haven in Equestria: Canterlot. As Donna ventures into the Changeling Castle to find Esmeralda's greatest weakness; the Doctor, Twilight, and Angie take charge and Angie goes beyond what she ever expected of herself.

This story is a sequel to Doctor Whooves Episode 17: Angie the Great

Upon returning to Ponyville, the Doctor learns that there's a new mare in town by the name of Colgate and that she desperately needs his help. When a chance encounter leads to Twilight and Pinkie Pie getting trapped in the past, the Doctor will have to solve the mystery behind Colgate's curse as well as learn her connection to an ancient and lonely creature.

This story is a sequel to Doctor Whooves Episode 21: The Cybermen Invasion of Equestria

Twilight's clone, Thalia, has been born. A converted, human Celestia has been ordered to obtain the Elements of Harmony and destroy anything in her way. An army of wretched creatures has appeared within the Everfree Forest. The Doctor seeks to unravel the mysteries of Discord Whooves's past. Secrets will be revealed, breaking points will be tested, and the impossible will begin.

This story is a sequel to Doctor Whooves Episode 19: The Rifts

The Doctor and his friends are busy celebrating Hearth's Warming Eve when an amnesiac, human Twilight Sparkle from another dimension appears with a cry for help. During the trip to this alternate world, the Doctor will have to save old friends, make new allies, face old enemies, and confront one of his greatest foes yet: himself.

This story is a sequel to Doctor Whooves Episode 20: The Cure

Discord Whooves and his Cybermen armies have passed through the rift vortex and now nothing in Equestria or beyond is safe. As the battle begins and armies clash, several individuals set out to survive the invasion. And as the Doctor begins to develop a plan to defeat his darker self, he is unaware that Discord Whooves has sinister plans in mind for those close to him.

This story is a sequel to Doctor Whooves Episode 18: The Mystery of Colgate

Colgate crosses paths with Clockwork and Bright Eyes following her arrival in the tourist-centered, mysterious country of Elmheim. Upon crossing paths with Matilda and a universally-displaced Daring Do, the group sets out into the jungle to discover the hotspot for dimensional rifts in the Equestrian universe. But their trip to the rift epicenter will be far from simple.

The Doctor suddenly finds himself in the magical land of Equestria and soon discovers that he's regenerated into a pony. As Twilight Sparkle tries to learn more about the Doctor with the help of Spike and Princess Luna, a creature from the Doctor's past arrives in Ponyville with evil intentions.

This story is a sequel to Doctor Whooves Episode 4: Young Armor

The Doctor and Twilight have picked up a mysterious mare named Matilda who seems to know them pretty well. While they try to uncover Matilda's secrets, they find themselves in Equestria 100 years prior to the birth of Princess Celestia. Here they come across a kind and caring King Discord and his wife, Lily, who holds the key to his descent into chaos.

This story is a sequel to Doctor Whooves Episode 2: The Awakening

The TARDIS takes the Doctor and Twilight to the planet of Eugora in the year 1899. Here they come across a group of pony soldiers, explorers, and scientists. However, the forests of Eugora hide dark secrets and the Doctor, Twilight, and others find themselves facing off against two deadly enemies, and the Doctor knows one of them.