This story is a sequel to Doctor Whooves Episode 5: Before the Chaos

The Doctor finally manages to return Twilight to 1002, only to discover that he's brought her back a little bit late. As the suspicious citizens of Ponyville turn on the Doctor, a strange army led by an old foe invades the town.

This story is a sequel to Doctor Whooves Episode 3: Aliens Among Us

After leaving Eugora, the TARDIS takes a giant leap through time and sends the Doctor and Twilight to Canterlot in the year 987. Here they come across an 8-year-old Shining Armor who is dreaming of becoming a royal knight. However, a devious villain has set her sights on the young unicorn and it's up to the Doctor and Twilight to save his magic, his life, and his future.

This story is a sequel to Doctor Whooves Episode 1: The Doctor in the Box

Following an accident with the TARDIS, the Doctor and Twilight find themselves 1000 years in the future. Here they find a futuristic Equestria, a confused Queen Celestia, and a pony from the Doctor and Twilight's future who wants revenge.

This story is a sequel to Doctor Whooves Episode 7: The Good, the Bad, and the Derpy

The Doctor, the Mane 6, Derpy, and Spike travel to 4376 and find themselves on a luxury spaceship called the Queen Philippine, which is currently on its maiden voyage. What starts off as an interesting adventure turns into a fight for survival when the ship loses power and becomes host to some unwanted passengers.

This story is a sequel to Doctor Whooves Episode 9: Triple Rainbow

It's been a month since the Mane 6, Derpy, and Spike started traveling with the Doctor. Things suddenly take a turn for the worse when a foil from Twilight's past mysteriously appears in the TARDIS and they all end up trapped in a seemingly-abandoned asteroid base that has a bad infestation.

This story is a sequel to Doctor Whooves Episode 8: Maiden Voyage

The TARDIS brings the Doctor, Twilight, Derpy, and the others to the Griffin Kingdom in the year 1021. Here they meet a 38-year-old Rainbow Dash training for the Gailenean 1000. Meanwhile, a third Rainbow Dash from an alternate reality appears but with much darker goals in mind.

This story is a sequel to Doctor Whooves Episode 6: A Ponyville Invasion

With Thalia continuing her invasion of Ponyville, Derpy and the others find their last chance at stopping her in the hooves of a future regeneration of the Doctor. Meanwhile, the Doctor teams up with an ally from the past to rescue Twilight and Rainbow Dash and ultimately save the town.

This story is a sequel to Doctor Whooves Episode 14: Work of Fiction

The Doctor, Twilight, and Derpy finally arrive in the Doctor's universe, and just in time for Christmas. The Christmas cheer ends, however, when a group of odd enemies attacks a cozy country hotel. In order to defeat these strange foes, Derpy will have to face something from her past and Twilight will have to help the Doctor reunite with a lost friend.

This story is a sequel to Doctor Whooves Episode 12: A Dalek in Celestia's Court

The Doctor has been living in Ponyville for several weeks now and Hearth's Warming Eve is just around the corner. However, the peace is shattered when a mysterious stallion from another dimension named Clockwork appears. As the a dark nightmare wreaks havoc, Twilight is forced to examine her true feelings for the Doctor and Clockwork must face the fate of his wife, Twilight Sparkle.

This story is a sequel to Doctor Whooves Episode 13: Clockwork and the Doctor

The Doctor, Twilight, and Derpy head off to the Doctor's home dimension, but something goes wrong and they instead end up in a dimension where they were merely fictional characters in television shows. Things get even more complicated when they end up separated at a certain My Little Pony convention alongside two fans and a mysterious figure with an odd arsenal of powers appears.