The story of the newly promoted Admiral Twilight Sparkle, and her first command. A fusion fic with various science fiction series by David Weber, principally but not only the Honor Harrington books.
Cover image from Kampzvono on Deviantart, used with permission.

Having lost much of her past, memories and purpose in life, Aurora Borealis stumbles upon the junkyard and its sole inhabitant Scraps. Having regained her name and desiring to find her past and place in the world, she begins to walk the paths of discovery. But what she finds and what impact she has may be more than she ever expected.

Set in the Fallout Equestria universe as described by Kkat (if you haven't read it yet, http://www.equestriadaily.com/2011/04/story-fallout-equestria.html go read it now, I can wait a couple of weeks)
Ember is a young unicorn mare who regains her freedom after years of slavery. Follow her on her journey through the wasteland. Will she withstand its horrors without going crazy? Will she be able to come to peace with her past? Will she ever find happiness? And most importantly: will she ever find something tasty to eat?

Only one way to find out.

If you do or do not like this story, please leave a comment. Feedback is appreciated :D

Sunshy is a timid buck, often mistaken for a filly. He's a pegasus with strong similarities to Fluttershy. Everyone seems to think he is her reincarnation, but it seems to be a good thing. Stranded in the Everfree Forest, he finds his special talent is helping animals and healing. He has a strong affinity with the unchanged Manticores. After being named a Dashite by his own people, followed by even more tragedies, he leaves Equestria and finds himself in the land of Zebras. How much will his life change in such a harsh wasteland after the cushy life he has lived?

Mailponies, the couriers of Equestria, carry important documents and packages back and forth throughout the land. Known for being kind, steadfast, and reliable, they are bound by a code of conduct detailing how to behave. In this code, an emphasis is placed on camaraderie between fellow mailponies. They are to trust, assist, and cooperate with each other whenever they can.

When mailmare Ditzy Doo finds an injured stallion by the edge of the Everfree Forest, she takes him under her wing. Upon waking, she discovers that he is, in fact, another mailpony, bound by the same creed as her. Through an adherence to the rules and the kindness of her heart, she allows the stallion to stay with her until he recovers. What will life be like for him under the Doo roof? More importantly, will he survive Dinky?

Art by http://artistic-derp.deviantart.com/

Princess Celestia sends four adults ponies out into the world. They find that just because it's not your destiny to save the world, doesn't mean a goddess won't ask you to do just that. This story follows the tale of Pokey, Redheart, Cheerilee, and Medley as they find out what it means to sacrifice for the greater good of Equestria.

Earth Pony industrialist and inventor Epona Stark had everything she could hope for: wealth, fame, a lucritive partnership with the Equestrian Military and stallions at her beck and call. But when she's attacked and ponynapped by an anti-diarchy terrorist group after a weapons presentation to Princess Celestia, she's left with a literal broken heart and a new mission in life.
Assisted by her dragon assistant Sparks, her beleguered unicorn secretary Pepper Pot, and her Equestrian Military liason Dusty Roads, Epona Stark will rise to become a metal-clad superheroine, Iron Mare. But will her brilliant mind and magic-tech suit of armor be able to protect her from the enemies who are scheming to tear her down?
Part of the Marevel Ultimates series.

(Teen for Violence and Implied Sex)

Mr. Horse's pet courier has been murdered and his property stolen. And while the price on the killers' heads is good enough to get any bounty hunter's attention, it's the bonus for returning a silly little poker chip that draws Dead-Shot in.

A pony could retire on that kind of jackpot...

(2nd Person Romance Story starring stoner "you" and Twilight Sparkle)

It was the night of the Harvest Moon Music Festival when you met Twilight Sparkle, a lovely mare, just after a little fun to offset all the stress in her life. You hit off really well with her and you can both feel a spark, but you wonder what you did wrong when you wake up in your hotel room with some missing memory and Twilight nowhere to be seen.

Author's Note: Alright people, let's get this out of the way. Clover. Yes, it is pretty much marijuana in my story. Coffeebean was the one who came up the concept and I'm using it for my story. It's not just there for fun, it will have an impact on relationships with multiple characters. Second off, this story will have a very sensitive matter at the heart of the story. I can't tell you what, simply because I hate spoiling a story. But remember when I said this is going to be an emotional rollercoaster? Think of one of those super coasters that have like sixty loops and spends half the time upside down. But I assure you, it will still feel like one of my stories, having happy, funny, sad, and romantic parts to it.

Having joined the Wonderbolts to increase her skill as a flier and have fun seemed like a good idea long ago, but after seeing the accomplishments of Rainbow Dash, Spitfire begins to question her freedom, approaching the rainbow maned pegasus one night after a show. When Rainbow Dash is questioned about her motives to join the Wonderbolts, her answer surprises Spitfire, and the two come up with a wonderful idea.

This is my first ponyfic, so I'd like some feedback. If you have any questions I'm glad to answer. Of all the shipping I've seen this is probably my favorite, and this is my take on it.

You can find a Youtube reading of this fic as well! Here's Part One and Part Two
Picture credit goes to bigponymac on Deviantart.com