Please do check out the Reading List by Lance Omikron to navigate the Amalgam Universe most clearly

A massive war of titanic forces is taking place in the Kaiju's world. However, when two faction's leaders, the current Godzilla and his 'brother' Xenilla duke it out; humanity unleashes its most devastating weapon. Something beyond comprehension occurred and the boundary that divides worlds, if only for the briefest of moments, was torn to shreds. New forms are taken, new bodies assumed. But old hatreds die hard. But how well can hatreds continue in the world of love and tolerance? Especially with its own demons follow it there?

Godzilla Franchise by Toho Company Ltd.
My Little Pony is owned by Hasbro Studios.
This is a non profit fan-work and I claim no ownership on the IP itself.
Story created by Tarbtano
Co-created and Contributed by Faith-Wolff and Skylark8756

HOLY SHEETZU WE GOT FEATURED! THANKS GUYS!
6/27/2014
Now on TV tropes (Thanks Raidrik, VampyGirl; Lance Omikron, Ultimomant, and ZimFan!)

Kaiju Cast:

Godzilla a.k.a Gojira
Xenilla
Mothra
Anguirus
Rodan
Destroyah

[Character copyright of Toho and Daiei Company, artwork property of Matt Frank]

(for any G-fans, Xenilla is the kaiju you may know as Spacegodzilla. I changed the name because I got quirked about typing it repeatedly and am writing the story so it can at least be understood by just an MLP or just a G-fan; and thought it get very confusing that one character's name was just another character's name with an adjective. Also... don't pretend it's the most imaginative name Toho has every made)

A few hours after saving the Friendship Games, Sunset Shimmer and her good friend Twilight Sparkle are relaxing on the CHS lawn. The two are so close that Sunset finally feels like she can ask a question that's been on her mind for a while.

"Can I go home?"

Shining Armor decides he is Twilight Sparkle.

Scootaloo has a secret. One that she's been hiding her whole life, and after the royal wedding has no choice but to share.

Apple Bloom has a secret. One that she's been hiding for six months, and is still terrified of.

Sweetie Belle has a secret. One that she's been hiding for... well, she doesn't know how long, and is looking for answers to.

So what happens when three not-ponies find out their friends aren't ponies either?

Well, one thing's for certain: they're going to have to come up with a new name for their club. Hopefully one better than the title.

Cover by Crimsion Ink

First few chapters edited by metallusionsismagic, AppleTank, and the last few chapters edited by Crocoshark, Bahamuttone

Featured May 30, 2015!

Twenty-five moons ago, an accident unleashed billions of nanoscopic machines called Nanites, which spread to every corner of the globe and infected every living thing.

Most of the Nanites are inactive. A lot of them aren't.

When Nanites go active, their host organisms mutate unpredictably, becoming dangerous creatures called EVOs. Some EVOs have control over their powers. Some remain intelligent. Some even just want to be left alone.

Some have more sinister goals.

And then there's the outsider. One teenage girl who is, in reality, a unicorn exiled from another dimension. Having turned her back on Equestria and fled through the mirror at almost the exact same time as the Event, Sunset Shimmer has become the most extraordinary, unusual EVO of all...

...and she has the power to cure EVOs.

But will a self-centered, power-hungry, arrogant former unicorn really save a human race she doesn't care anything about?

Adapted from Generator Rex by Man of Action.

(Cover art is temporary; permanent cover art coming later...)

Broken and beaten after the failed Canterlot invasion, Chrysalis desperately searches for a way to save her hive. The answer comes to her in the form of an ancient spell that allows travel to other worlds. Starving, feeling left with little choice in a world that despises and fears them, Queen Chrysalis and her Changelings pack their metaphorical saddlebags and ship off into the unknown.

The world they discover is unlike any other. Strange and powerful creatures inhabit the land; not only that, but they also find themselves imbued with new powers. Even better—love is abundant and easy to obtain: all they have to do is fight for their lives in arena-style tournaments, enter beauty pageants, musicals, and other demeaning activities.

As Chrysalis and her ’lings adapt to this new world, they must also be careful. This new paradise comes with its fair share of dangers: other monsters competing for affection, unkind masters, and even an organisation that would seek to enslave and experiment on them.

Finally, why does someone named ‘Arceus’ keep sending Chrysalis Legendary Pokémon Application forms?

Edited and proof-read by the amazingly talented Cerulean Voice Blame him for this awesomeness~

Edit: Featured on the 25/03/2015. Thanks so much everyone.
Featured on EQD on 17/04/2015.

I'd like to thank Pascoite for being my Pre-reader. You are a legend and a master of your craft. Thanks again bro.

Ever had one of those days where everything's just gone wrong, one problem after another?

Of course you have.

Ever had one of those days when you wake up to find you've accidentally switched places with your counterpart in a world where you and all your friends are stallions?

...No?

Maybe that's just Twilight, then.

But the Princess of Magic isn't going to let a little thing like being in the wrong universe ruin her day. She has a schedule - a checklist! - and it matches up with this Dusk Shine's perfectly. Apart from the names and the genders, everything seems to be a match, and Ponyville has seen much weirder things since she moved here.

Being stallions or mares shouldn't make her friends that different. What could possibly go wrong?

A flip of a coin. A twist of fate.

Twilight Sparkle, younger sister of Princess Celestia's personal student, Shining Armor, grew up listening to her brother's bygone dreams of joining the elite of the elite: The Royal Guard.

Now, fresh out of the Academy, this young mare is ready to prove herself equal to the deeds of the great soldiers she read about as a filly. Too bad the princess she ends up protecting isn't Celestia.

Twilight is the Princess of the Stars, but there's something about them that Celestia neglected to mention. Celestia rules over the ponies, Luna over the batponies, Cadence over the crystal ponies, and Twilight will now discover that her subjects are nothing other than star ponies.

And when one falls into her library, she realizes that her job is a lot harder than she thought.

--------------------------------
** This story was written when I was 16, and the quality and content reflect that. Please be aware that my position on topics contained within may have changed in the time between publishing and now, and I apologize for any offensive material that I may have condoned in my younger years. **

Sombra never realized this would happen.
Usually a villain is suppose to be defeated, right?
So, why did he, well...win?
Even he was shocked to see the crystal heart in his hooves. Never in a thousand or so years did he think he would pull this off; that he would actually...win.
So, what will he do now? Just rule over everyone and enslave all of pony kind? Or Perhaps kill the princess and mind control that purple unicorn and her friends? Or maybe have some common sense and figure out just how he will deal with all of this in the long run? With all these questions, he knows one thing for sure.
This is going to be very awkward.