This story is a sequel to Scion of Chaos

Five years after the summer in which the three had gotten their cutie marks, Scootaloo, Sweetie Belle and Apple Bloom, now young mares in their own right, decide to go on a quick summer vacation, all as an attempt by Sweetie Belle to cheer up a sad friend. However, the trip turns out to be more than they had anticipated.

Set five years after Scion of Chaos and An Emerald Treasure. For the sake of context I'd recommend reading both of those first.

Special thanks to Mac349 and Plebeian for proofreading. Thanks to CMC4TW for editing/idea-mulling.

Captain Rainbow Dash of the Wonderbolts.
Has a nice ring to it, doesn’t it?
Certainly her dream job.
Well, dreams and reality are two very different things.

Especially when our newly minted captain has to deal with an empty roster, budget cuts, the first non-pegasi cadets, and the pressure of finding out your best friend is now your boss, let alone a princess.

If that weren’t enough to make her quit, her three wing commanders might. Cloud Kicker is a sexual harassment lawsuit waiting to happen; Surprise makes no sense; and Lightning Dust is, well, Lightning Dust.

Meanwhile, Scootaloo arrives at the academy, ready and raring to prove she’s got what it takes to be an elite flyer. Pressure mounts as Scootaloo aims to make her hero proud.

Now on Equestria Daily
Editors: ping111
NotMurphy
Georg

Thanks for pre-reading go to:
John Perry
Distaff Pope
SolidFire
nygiants93
Eakin

Cover art used with permission by GSphere

Applejack, Twilight, and Rainbow Dash really enjoy each other's company. So much so that some ponies are beginning to wonder about them. Twilight and Applejack are a couple after all, so its a bit unusual that Rainbow always seems to be invited along. But sometimes, a couple is more than two.

Thanks to Steel Resolve, Lycan_01 and Macdjord for editing and brainstorming!
Cover art by Graystripe64.

Twilight Sparkle has hit a wall in her studies. So when she is tasked by Princess Celestia with joining an expedition on a faraway island, she can't help but see it as a form of punishment. Nevertheless, she packs her bags and heads to Baltimare, one of Equestria's many port cities. It should have been simple: find a ship offering passage and pay them to take her to Haven. She soon learns, though, that ponies are afraid of the unknown waters past Eternity's Crossing. Despite her best efforts, she is unable to find a ship willing to take her there. That is, until she meets Captain Rainbow Dash.

Brash and enigmatic, Rainbow Dash, along with her crew, are the only ones willing to ferry Twilight on the waters of the Forgotten Sea. She expects six months of quiet travel that will allow her to continue her studies. What she gets is an adventure which makes her realize that, when sailing the high seas, the line between right and wrong is never as clear as it seems.

(Featured on EQD as of 4/28/13
A huge thanks to Breath of Plagues and Amacita, who are amazing editors.
Credit is also due to psychicscubadiver and Zeta040 for pre-reading.)

After the Changeling invasion, Celestia and Luna make the decision to have Twilight investigate the Elements of Harmony and solve the mystery of their power.

A thousand years later, Rainbow Dash awakens in a world she does not recognize. She has no idea how or why she came to be there. She does not know the language, the geography or any of the rules of this new time. She soon finds allies in Star Fall, a scholarly pegasus whose Talent is Magic, and Astrid, Star Fall's Griffin guardian. Together they set out to discover why Dash has been sent to the future, and how she might return to when she belongs.

War threatens the nations, a Nightmare stalks the shadows, and Rainbow Dash's arrival has turned her into a wild card in a deadly game that pits the law on both sides of a broken Equestria against a mysterious criminal figure, Max Cash. Yet the stakes are higher than anyone knows, for in her research Twilight Sparkle discovered a dark secret about the Elements, something that will shake the foundations of the world.

Cover image by SierraEx
Has a TvTropes page

When Twilight Sparkle slipped beneath the covers last night, everything had been fine. She had friends whom she loved, a teacher she adored, and a bright future ahead of her. But when she woke up, her blankets and quilts had been replaced by hospital gowns and padded restraints.

Everything is wrong and nothing makes sense; even her friends have changed. The doctors keep telling her that she is sick, that none of it was real and that it was all in her head. Yet she remembers a life far beyond the hospital walls. She couldn't have made it all up on her own. They must be lying… right?

Ask Asylum Twilight - Still updating regularly!
Equestria Daily
TVTropes
Asylum Fan Group
The Tartarus Project
Russian Translation
The Asylum 20,000 View Spectacular Stage Show!

Art:
Asylum Cover by conicer
Twilight and Twilight Smiles by dreamingnoctis
Mirror Twilight and Plague Doctor by Jaestring / BloodGoldWings
Twilight Smiles and Doctor AJ by conicer
Nurse Ratchet and Silas and What's in the mirror? by Archonix
Doctor AJ Sketch by Archonix | Colored and vectored version by ReFro82
Twilight's Asylum by Khan the Cake Lover
Smilight by HappySwitch
Twilight Waking Up by Dombrus
Fan Art by toxicdemon10
Asylum Twilight by Madness-With-Reason
Asylum Fluttershy and Asylum Ch 26 by Downburst-Backspace
Twilight and her Twin by v747
Birdgirl by sirValter

Readings and Videos:
Asylum Animated Trailer Video by formuladash
Reading by Gammarobot (SugarCubeRadio): All Chapters Here
Reading by Ender Brony: All Chapters Here
Reading by VisualPony: All Chapters Here
Reading by MelancholyIguana: All Chapters Here
Fan Trailer by Kaidan: Asylum FanFic Trailer Cuckoo's Nest

Sanctuary by Kaidan
Broadhoof Files: Dr. Humors by TypewriterError
Broadhoof Files: Corporal Phalanx Spear (Ret.) by Phalanx Spear
A Hearth's Warming Tragedy by Seven Fates

A special thanks to Breath of Plagues, Rex Ivan,
ChudoJogurt, Cynewulf, Death the Kid, Selbi, PrinceDolph, Blahman2816, Queue, and Gage!

Axan Zenith - Dr. Dreamer
Dratini4 - Way Finder
psychicscubadiver - Bright Mind
Velkaden - Dream Chaser
Reese - Silver Glow
Viola Heartstrings - Clover
Archonix - Spinney Whiteacre

Memories are the soul of the self; it defines the past, shapes the present, and guides the future.

A year has passed since the events of What Would Daring Do. The memories of their struggles have bonded Applejack and Rainbow Dash into a union of love. But when those memories are lost, can Applejack find the strength and resolve to save the pony she loves? A broken mind is a catastrophe; a broken heart, tragedy.