This story is a sequel to The Twilight Enigma

More of a mid-quel than a sequel, really. A Slice o' Life which takes place somewhere in the middle of Chapter 22 of The Twilight Enigma, and demonstrates that quiet enjoyment may be found in the middle of desperate adventures. Even pirates need to kick back and relax sometimes.

This story is a sequel to Freeport Venture: Come And See

When Twilight Sparkle traveled through time to stop Starlight Glimmer, she had no idea of the wider consequences of their actions. By trying to restore her old world, she was also wiping away the new ones that Starlight's changes to the past had created. Now, the last remnants of those destroyed worlds have come for revenge.

Co-authored by Ponibius

When she was young, Megan rode into Ponyland on the back of a flying pony.

Or not. She doesn't know anymore.

All she knows is that for the second time, a pegasus has crashed into her well.

(Mentions scenarios and characters from G1, but no real knowledge of that gen is required.)
Edit 1/14/2017: Added alternate universe tag due to events not matching up to gen1 canon. Added tragedy tag because I thought it fit/was needed.

This story is a sequel to Hocus Pocus

A few years have passed since the events of Hocus Pocus, and the lives of Ditzy Doo and her daughter Dinky have never been more exciting. Dinky's final year of study at Celestia's Academy for Gifted Unicorns is about to begin, and Ditzy's relationship with her coworker, Autumn Breeze, has blossomed into a beautiful partnership.

But when a figure from both ponies' past reappears, events quickly escalate out of control, and soon, Ditzy and Dinky find themselves wrapped up in what may be the greatest crisis Equestria has ever faced.

In this final chapter of the Shipping and Handling trilogy, two ponies learn about the greatest magic of all.

(Excluding the prologue and epilogue, takes place 3+ years after Hocus Pocus, and between seasons 8 and 9 of canon MLP.)

Puzzle Piece is the premier information broker in the infamous nation of Freeport, leading one of the most powerful and wealthy organizations in the islands. However, after months of absence from Freeport, he returns to find everything he built in shambles and his lieutenants fighting over the remnants. With chaos reigning in the streets, the Council tells him to get his house in order or see his life’s work swept away. Unfortunately for Puzzle, there are forces in Freeport that don’t want to see him succeed. Nobody can be trusted, nothing is safe—not even his deepest secrets.

A chronological sequel to Northern Venture.

The Great and Powerful Trixie has eagerly been looking forward to her date with Starlight Glimmer, but her hopes of a wonderful evening with her fillyfriend are dashed when she finds Starlight taking care of Flurry Heart. Now Trixie finds stuck herself helping with the royal foal. Still, it’s only for a little bit, and the worst of Flurry’s magical outbursts are surely long behind her—between her and her fillyfriend, how hard could watching a foal for a few hours really be?

A standalone Winningverse story.

This story is a sequel to Empty Horizons

For the first time in a thousand years, the old magic has returned to Equestria.

The Elements of Harmony have been torn asunder by the careless Equestria they found themselves in just one month ago. Twilight Sparkle fled into the ocean, pleading for her friends not to follow her after only barely stopping the destructive rampage caused by The Other. Rainbow Dash and Applejack, with nothing but their knowledge of Twilight's nature and a crew of seasoned adventurers, leave Altalusia hoping to find their lost friend and bring her back. Meanwhile, Countess Rarity finds herself trapped among the machinations of Duke Titus, but perhaps she can yet use her new position for good.

But the new Equestria remains as treacherous as ever for six mares lost in time, and the sunken ruins of their old home still holds fresh and terrifying dangers. Mysteries a thousand years old demand solving, and even those born on the floating islands of the new Equestria may find themselves torn between two paths.

The world changed in the absence of Twilight Sparkle and her friends, and with their return it braces for change once more.

Audiobook updates Thursdays and Fridays!

Edited by Noc, Dominus Alicorn, and PsyonicG.

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This story is a sequel to The Lunar Rebellion

When Queen Celestia has to temporarily leave Equestria on business, she needs someone to look over the kingdom in her absence. Much to everyone's surprise, she chooses the ambitious Sunbeam Sparkle to serve as her regent rather than the steadfast and loyal Shadow Kicker.

However, Sunbeam has little time to ponder why her monarch chose her. The Golden Path of Freeport, a corrupt regime ruled by false gods, sees Celestia's absence as an opportunity. Now Sunbeam must face a foe that claims to be every bit Celestia's equal, and with no divine powers of her own...

A human, having suffered due to the mysterious means of his transmission from one world to another, is stuck in bed recovering from his injures. While a little alarmed to find that the one looking after him is not human herself, he can't do much about it.

It helps that - as he finds - she's also rather good company.

This story is a sequel to Queue

When Rainbow Dash gets a copy of the last Gargantulon movie for her birthday, she's left floored by its tragic ending-- which forces her to take matters into her own hands!