This story is a sequel to The Grey Factor

After Twilight gave birth, she began to have two strange dreams. In the first, her child was a son, the destined son to fulfill the prophecy of the Grey Factor. In the other dream, her child is a filly. Which reality is true, and which is false? Follow her story as she searches for the truth.
Sequel to the fic "The Grey Factor" by my good friend Japko, with concept bare-facedly stolen from Awake.

Sequel to Moonbeam. Follow along and learn how Princess Luna fares in reintegrating herself back into Equestrian society, and how her friends from Ponyville cope with the changes to their lives that being close to royalty brings.

Romance, palace intrigue, and swashbuckling adventure await our six heroines when Princess Luna summons the Elements of Harmony to Canterlot.

I started writing this story in the middle of March 2011 and submitted the last chapter and the epilogue to EqD 3 1/2 months later on July 4th. The basic idea for it, though, had come to me after watching the first two episodes on YouTube at the beginning of that February, but it took me a month to discover there were places on the net to which a person could send fanfiction and have it posted. I don't get out much, y'see...

The discerning reader may, therefore, find a bit of canon-fodder here and there, and for all that I've thought about diving back in and changing a few things to make the story line up better with Season 2, I'm not gonna. For better or for worse, this story's done, and I hope to use what I learned while writing it and from the comments it's gotten--and the comments I reckon it'll get here--to make my next story better.

Mike

Cheer up, Twilight. It's not every day somepony changes species. In fact, no pony has ever changed species. It's something new and you like discovering new things. Granted, Equestrians don't like new things, especially things that fundamentally alter their government. So maybe there is reason not to be happy after all.

Nightmare Moon always had a backup plan if she ever were defeated; she would slowly regenerate herself and regain her power. The problem is she never expected to come back as a defenseless filly, or to return directly in front of the princesses. As punishment for her past crimes, Luna has given her a sentence far worse than being sent to the moon again. Nightmare Moon must move in with Twilight and report to Luna on the magic of friendship. She's not very happy about it.

By the way I am not trying to rip off Past Sins in any way. Nyx is NOT in this story, this will go in a completely different direction.

Reports of strange, almost sentient storms have been trickling into Canterlot from all over Equestria during the past month, and Princess Celestia has noticed an uncanny similarity between each of these reports. Every time one of these storms appears, it is clear that these storms are hunting for something.

Despite the obvious connections between each of these occurrences, it is unclear as to what it is that the storms in question are searching for. Unclear, that is, until tragedy befalls one of the Elements of Harmony. The remaining five ponies must hurry to uncover the answers to some very fundamental questions, all the while fighting to protect the remaining Elements.

However, in order to do so, they will have to dig down to the age-old fundamentals of good and evil, learning things about themselves that might have been better off left unlearned...

-Not every cloud has a silver lining, but everything good has something evil to go along with it.-

A diplomatic crisis arises between Equestria and the small, poor kingdom of Tarandroland, ancestral home of the reindeer. Celestia and Luna agree that it is time Luna takes a more active hand in foreign relations again, and Luna brings Twilight with her as someone she actually trusts and can talk to. But the mission turns out to be much more than political discussions - if scheming unicorn courtiers, unfriendly surly reindeer, bloodthirsty pirates, ancient sorcery and dangerous monsters weren't enough, our heroines must deal with something old - older than Luna. And is Luna really ready for diplomatic action, will Twilight learn to use a fan properly, and exactly how wrong are Spike's superhero comics about reindeer mythology?

Now has a TV tropes page

Twilight Sparkle never meant to do anything wrong. But then again, all magical mistakes are caused by ponies who have no idea what happened. That's why they're called mistakes. The only difference with Twilight's mistake is that it accidentally sort of turned her into Princess Celestia. And now she doesn't know how to change back.

The Doctor takes to the stars in this fourth installation of the Doctor Whooves Series.

When the TARDIS is unexpectedly pulled off course during her first foray into the wider universe, the Doctor, Rarity, Pinkie Pie, and a somewhat-reluctant Twilight find themselves brought to the doorstep of a utopian alien city. While Rarity and Pinkie immerse themselves in two opposite ends of the local culture, questions that have gone unasked for centuries draw Twilight into the shadowy labyrinth of intrigue and deception that sustains a delicate balance of power in this "perfect" society. A balance that some will go to any lengths to preserve.

And as the mystery surrounding the cryptic messages left in the Doctor’s path continues to unfold, will the growing schism of distrust between Time Lord and Friendship Scholar over unspoken secrets cost both ponies more than either of them are prepared to lose?

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"Only Skin Deep" is my fourth Doctor Whooves Episode and the sixth in the expanded "Number 12" continuity begun by the inspirational Squeak-Anon.

It is strongly recommended to read the following fics here on FIMFiction.net before proceeding with "Only Skin Deep."

1- Number 12by Squeak-Anon
2- Traveler by Squeak-Anon.
3- The Pinkie Conundrum
4- Game of Stones
5- Along Came a Spider

Comments and critiques are very much desired and let this crazed writer-pony know that the herd does indeed care.

Elements of Number 12 & Traveler (c) Squeak-Anon
Doctor Whooves Intro posted on Youtube by: Cshep99
Cover & Concept Art provided by FoxInShadow from Deviantart.com
Number One Assistant & Proof-Reader - 2dextreem
*Rated T for some Doctor Who level violence.*

There really is no excuse for forgetting something as important as a hoof-written law. But Celestia forgot. And now, a thousand years after she wrote it, a law comes into play mandating that Celestia take a two-month sabbatical from her duties as Princess of Equestria.

So what happens when she has to step down for a couple months and leave Luna by herself in the bloody gladiator ring that is Equestrian politics? What happens when Celestia has to disguise herself and mingle with the populace of Ponyville without them knowing?

The short answer to that would be "a string of hilarious chance encounters, sisterly banter, romantic mishaps, and a political coup that was decades in the making."

The long answer, of course, is this story.

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Rated Teen for swearing and sexual humor.

Cover image is by enma-darei