This story is a sequel to Equestria Ninja Girls: Wanted Bebop and Rocksteady

When Sunset Shimmer discovers the Rainbooms and the students have lost their good memories of her, she and Fugitoid must enlist the help of some unexpected allies to recover those lost memories before they're gone forever, and Sunset will forever be remembered as a bad girl.

***Now with Beach Shorts

This story is a sequel to Equestria Ninjas: The Movie

After the Mutagen Bomb, the world was wiped out, leaving the turtles and the Rainbooms separated from each other. Now they must fight to survive in the apocalyptic wasteland from the threat of warring mutant gangs all while trying to find the only place left in the world that has any life to it.

This story is a sequel to Equestria Ninjas: Shadow Play

The Rainbooms and their friends join their mutant allies in New York for some Holiday cheer and make some happy memories.

This story is a sequel to Equestria Ninja Girls

Picking up where they left off, the Rainbooms after escaping the planet earth's destruction at the hands of the Triceraton Empire are given a second chance to stop them from destroying their planet. They're transported from Equestria back to their world on board a space ship where the turtles and their friend the Fugitoid set out into space to stop the Triceratons and retrieve the Heart of Darkness.

Sequel to Equestria Ninja Girls. Highly recommend read first before reading this.

This story is a sequel to Equestria Ninja Girls Rainboom and Crystal Ninjas

The turtles and their human friends return to Equestria to uncover the truth behind the disappearance of Star Swirl the Bearded and the Pillars of Equestria. But will discovering the truth lead them to an even bigger problem?

This fic contains no spoilers from Equestria Ninja Girls Rainboom and Crystal Ninjas

This story is a sequel to Equestria Ninja Girls in Space

After a mishap with a portal, the Turtles and their human allies find themselves joining the Rainbooms at Camp Everfree where there's mystery and magic in the air. With the Rainbooms gaining new magical abilities, they take their next step in their ninja training to learn to control their new powers and defend their friends from a danger lurking within the camp itself.

Sequel following the events of Equestria Ninja Girls in Space. Recommended to read before this.

Twilight and the girls of Canterlot High travel to New York to take on the Dazzlings who have allied with a mad man bent on revenge. The girls only hope to face the trio of sirens and their ally is in the form of four mutant turtles, their master, and their two human friends. MLP/Ninja Turtles crossover.

Inspired from a fan video.

This story is a sequel to Turtles of Equestria

The Rainbooms and Turtles are back together again taking on old foes and new foes with the help of the girls of Crystal Prep and an old robot friend. But with a vengeful ex-principal out to prove the existence of their magic, they may be in for a load of trouble.

This story is a sequel to A Rainboom Turtle Christmas

Hoping to find some excitement, the Rainbooms visit the Turtles only to find out Bebop and Rocksteady have allied themselves with Krang and an alternate Shredder who hope to conquer their dimension.

This story is a sequel to Turtles of Everfree

After the death of Master Splinter, the Rainbooms and Turtles team up to take the fight to the Super Shredder with the aim of ending him once again for all to avenge their sensei. Will their combined strength and friendship be enough to overcome the rage and evil of the most powerful mutant they've ever tussled with?