Fathers serve as role models for their children. However, when your father is the cruel and evil dictator of the Crystal Empire, all you can do is run. It doesn't help that you look identical to him either. Where do you go? What can you do? How can you live when everypony thinks you are the evil tyrant?

Special Thanks
Wolframclaws (cover art)
Raaron (proofreader)
Unimportant (editor)
LupoMikti (proofreader)
FloydienSlip (proofreader)

Batman has defeated many foes in his life. The Joker, Two Face, The Riddler, Poison Ivy...just to name a few. However, no matter how hard he tries, there was one foe he could never defeat...Time.

Finally beaten, he admits defeat, ready to give up...

But a tiny white unicorn might have something to say about that. A single word that gives him hope. A legacy. A way for Batman to conquer time itself, even if Bruce Wayne cannot.

That word...is "Father".
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Part of the PWNY-verse.

SF (canon species only; no humans) Ponies were magically and genetically engineered to be the perfect servitor race. They are powerful, adaptable, intelligent and completely under the control of their creators. A laboratory accident frees one such pony from her mental chains, but how can one mare save herself and the rest of her kind if she doesn't even know she's a slave?
This is not the Equestria you know and these are not your little ponies... not yet, anyway.

Tags: Adventure, Diamond Dogs, Gryphons, NO HUMANS (did I mention that already?)
Other tags: historical, mind control, Clarke's 3rd Law, excessive use of high energy physics, before they were famous.
Detailed review by PaulAsaran.
Cover art by endrome , used with permission.
Russian translation (partial -- 'unofficially' completed in the comments)
A Soot-Covered World, book 1.

This story is a sequel to Shadow of the Sun

Story 5 of the Savage Skies series:
Autumn has arrived in Ponyville. The harvest is in full swing and all is as it should be. After enduring the trials of the past few months, Dawn Lightwing is looking forward to what promises, hopefully, to be a peaceful season before a tumultuous winter. However, the coming season has the unwelcome effect of bringing his enemies closer than he feared. However, he is fortunate to have a loving family, good friends, and somepony who is maybe more than just a friend.
The series begins in Foal of the Forest.
Now with a TV Tropes page.

This story is a sequel to Fortresshy: The Nine Fathers

Fluttershy has returned to Equestria after being temporally displaced to another world, where she was raised by a loving but insane family. She didn't return alone, though. Her new family came back with her, now working for Princess Luna, their new Fortress being built near to Ponyville. All involved would need time to adjust.

Unfortunately, time waits for no one, pony or human. Still, the former RED Team - now Team RED MOON - is used to handling craziness. After all, they live under the same roof.

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Part of the PWNY-verse.

Edit: New fan art by G_Haze, who also did the cover art!

It's been ten years since Rainbow Dash's father disappeared in a wild, fierce thunderstorm. When the same strange storm hits Ponyville, Rainbow Dash does as much as she can to try and stop it from happening again.

But magic has a strange habit of making things reappear, opening old wounds that could change Rainbow Dash's life forever.

Caught in the middle of a struggle between Equestria and a neighboring country, Blueblood finds himself alone in unfriendly territory. Through trials and hardships he finds himself under the wing of a veteran soldier, and the arrogant, spoiled stallion begins a slow metamorphosis into the prince his country needs.

"... at the forefront of our fandom’s writing scene ... Masterpiece." —PCaRG
"... really enjoyable ..." —City of Doors
"...worthy of high praise." —PaulAsaran
"Lots of wonderful world-building, great action, well-developed characters and an engaging story." —Hoopy McGee

Steel Song is a lot of things. Earth pony. Uncle. Professional bodyguard.

Retired.

So when he receives a mysterious package from Princess Luna a few weeks after the changeling invasion, he's understandably apprehensive. More-so when he presents himself before the Royal Diarchs to find that not only do they desire him to come out of retirement, but to take command of a most unusual position...

A position that may have more significance than any of them suspect. Because strange thefts are occurring on the Equestrian Railway, thefts that nopony can explain. Thefts that may have far more sinister intentions than their seemingly innocent nature may convey.

Intentions sinister enough to shift the balance of power in Equestria forever.

Book I of The Dusk Guard Saga.
Epic Fantasy
Has a collection of Side Stories as well, the first of which is here.
Now with a TV Tropes page!
"This is 100% Approved by Twilight's Library!"
Added to Twilight's Library 11/26/2013
Added to Canterlot's Finest 12/01/2013

Luna has been redeemed by the elements of harmony, but is finding that salvation is harder to come by. Ponies avoid her, the memories of Nightmare Moon still fresh in their minds. Additionally, after a thousand years of solitude and silence, she’s having trouble adjusting to life in noisy, crowded, living Equestria.

Change never happens easily, and Luna struggles despite the help of her sister and new friends, failing as much as she succeeds.

Perhaps the Moon, her prison for so very long, is truly where Luna belongs after all.

This story is a sequel to Stardust

Everyone knows the story of Hearths Warming Eve. They know the tales of the three pony tribes and how their strife brought the Windigoes upon them, and how the Fires of Friendship saved them from their frozen fates. For countless generations the tale has been told, but how has it changed over those years?

Or is any of it true in the first place?

Only one pony knows, and Celestia would prefer that the past stay forgotten.

(Based on a 'What If' line of thought that was born from the Stardust storyline. While some familiarity with Stardust and Mente Materia doesn't hurt, this story can be enjoyed on its own)
(Coverart available soon from the amazing FoxInShadow!)
(Many thanks to Arzoo, BradTheBrony, Vandenbz, and Setokaiva for prereading!)
(Complete with it's own TVTropes page as part of the Stardust continuity)
(Character tags will be added as chapters are added!)
(Possible spoilers in the comments! BEWARE!)