The Doctor goes beyond Equestria in this third installment of the Doctor Whooves Series.

When a chance encounter with the Doctor in the middle of Ponyville causes Zecora to run away in blind terror, he is understandably perplexed, as the two had never met before. Shortly after, the cryptic zebra turns up suffering from a mysterious ailment that is somehow related to her homeland of Zebrica, and the Doctor, Twilight, and (much to their surprise) Fluttershy must travel to the distant savannah in the TARDIS to discover the cause of her distress. But what begins as a search for a cure will lead to a darker place than one might believe possible, as a mystery spanning the whole of time and space deepens and hungry gods from far-off memories demand the Time Lord’s blood.

"Along Came a Spider" is the third Doctor Whooves Episode and the fourth of the expanded "Number 12" continuity begun by the inspirational Squeak-anon.

It is strongly recommended to read the following fics here on FIMFiction before proceeding with "Along Came a Spider."

1 - Number 12 by Squeak-anon
2 - Traveler by Squeak-anon
3 - The Pinkie Conundrum
4 - Game of Stones

Comments and critiques are very much desired and let this crazed writer know that the herd does indeed care.

Elements of Number 12 & Traveler: Squeak-anon
Doctor Whooves Intro posted on YouTube by: Cshep99
Cover art provided by FoxInShadow from deviantart.com
Proofreader, Editor and Number One Assistant: 2dextreem

*Rated T for scary moments and some Doctor Who level violence.*

The Doctor's adventures in Equestria continue in this second installment of the Doctor Whooves Series.

His nature as a Time Lord revealed to Twilight's friends, the Doctor prepares for his first jaunt into Equis' history with Rainbow Dash when Applejack informs him of something mysterious she saw as a filly. Intrigued, the Doctor and Twilight, accompanied by Applejack and Rainbow Dash, travel 3000 years into the past to visit Ancient Roan during the Reneighssance Period.

Upon arriving, the ponies are beside themselves with wonder as they explore a place they once thought existed only in history books. They even get to meet a living legend in the form of Leonard DiHoovsie: the famous inventor, thinker, painter, and philosopher. But not everything is at it seems, and something disturbing is happening just under the surface of Roan's exquisite architecture. With strange rumors abound, and a string of unexplained and unsolved disappearances plaguing the historic city, the Doctor's companions are about to discover that some things are left out of the history books for a reason.

"Game of Stones" is the second episode of the Doctor Whooves Series and the fourth of the expanded "Number 12" continuity begun by the inspirational Squeak-anon.

It is strongly recommended to read the following fics here on FIMFiction before proceeding with "Game of Stones."

1 - Number 12 by Squeak-anon
2 - Traveler by Squeak-anon
3 - The Pinkie Conundrum

Comments and critiques are very much desired and let this crazed writer know that the herd does indeed care.

Elements of Number 12 & Traveler: Squeak-anon
Doctor Whooves Intro posted on YouTube by: Cshep99
Cover art provided by FoxInShadow from deviantart.com
Proofreader, Editor and Number One Assistant: 2dextreem

Following the events of "Traveler," Twilight goes to Canterlot to deliver her report on what has transpired since the Doctor's arrival in Ponyville directly to Princess Celestia. She leaves the Doctor in Spike's capable claws, asking him to show Equestria's newest arrival around town while the TARDIS rests and repairs itself from the trials of the previous day.

Although at first distraught at being stranded in the seemingly serene township of Ponyville, the Doctor finds himself reexamining his initial assumptions about the ponies, the land of Equestria, and his compulsive need to travel when he is confronted with the miraculous, impossible events surrounding Ponyville's resident party mare: Pinkie Pie.

The Pinkie Conundrum is the first in a series of continuity branching off from the foundations established by the Doctor Whooves stories: Number 12 and Traveler by the very talented Squeak-anon and all references to these two works of fanfiction is credited to him. Also, while this is a separate continuity from any future works by Squeak-anon, it is strongly recommended to read these two fictions before reading Pinkie Conundrum.

This work has been developed and published with permission and blessing of Squeak-anon, my original inspiration.
Doctor Whooves Intro posted on YouTube by: Cshep99
Cover art provided by FoxInShadow from deviantart.com
Proofreader, Editor and Number One Assistant: 2dextreem

If you enjoy this story as well as my other works, please leave a comment. Constructive critique is encouraged as well as any questions or remarks that may occur.

This story is a sequel to How Not To Use Your Royal Prerogative

  In an Equestria where the Sonic Rainboom never happened, Sunset Shimmer is the prized pupil of the Princess of the Sun. As Sunset struggles to make up for her past misdeeds and come to terms with the pony she wants to be, Celestia sends her to find the classic work The Application of Unified Harmony Magic from the Royal Canterlot Archives.
  Right after lunch, some meddling by her friends and meeting somepony with firsthoof experience of the Sunset she used to be.

Featured on Equestria Daily on August 18, 2016!
Appeared in the FimFiction Featured Box!

Cast: Sunset Shimmer, Moon Dancer, Minuette, Twilight Sparkle & Princess Celestia

Stories set in the Wavelengths Timeline in chronological order:

Origins Arc
The Alchemy of Chemistry
Bards of the Badlands
Grading on a Bell Curve
Habits of the Equestrian Phoenix
How Not To Use Your Royal Prerogative

Applications Arc
The Application of Unified Harmony Magics
Princess Celestia: A Brief History
The Cloudsdale Report

Dreamers Arc
Tactics of Snowbound Unicorns
A Study in Chaos Theory
Teahouses of Saddle Arabia
As the Raven Flies

Cover Credits
Cover Design by Amber Spark
Sunset Shimmer Vector by TigerBeetle
Pony SciTwi Vector by Osipush
Canterlot Bookshelves Vector by FavoriteArtMan
Sunset Shimmer Cutie Mark by MillennialDan

Beta Reader Credits
Ebon Quill - Worldbuilding Writer on The Manehattan Project
Quantum State - Technical Director of The Manehattan Project
The Albinocorn - Master of Sunset Shimmer Stories

Strongly Recommended Stories:
The Brightest and the Best by Pineta - The events in this story are considered to be completely canon to this timeline and explain Twilight's entrance exam to Celestia's School for Gifted Unicorns. I cannot recommend this story enough.
MLP Annual 2013 - "The Fall of Sunset Shimmer" - As above, the 8-page short comic in the beginning of the Annual is also considered to be canon, though with some major variations.

Version 3.0 Edit: Extensive grammatical and mechanics changes. Adjustment to timeline of Sunset's second mirror experience.

This story is a sequel to Changeling Courtship Rituals

Queen Chrysalis attacked Canterlot, brainwashed Twilight Sparkle's brother, kidnapped her former foalsitter, defeated her mentor in combat, and conquered her kingdom. She kidnapped the sisters of Twilight's friends, turned them against one another, and tried to drain all of Twilight's magic. Queen Chrysalis has, at every opportunity, done her very best to utterly destroy Twilight Sparkle's life.

For some reason, this has not caused the pony to fall in love with her.

However, due to Twilight's misunderstanding of changeling customs, it does mean they are now married. Twilight eventually managed to tell the Queen the truth, but she forgot that whether it's a kingdom or a heart, changelings conquer.

And since the changeling way of conquest didn't work, Chrysalis is determined to try the pony way. The only problem is, of course, she has no idea what that is. But she knows someone who does: Princess Cadance.

Now, with the absolutely sincere help of her mortal enemy, the pony she once locked in the caves beneath Canterlot while trying to steal her husband on their very wedding day, Queen Chrysalis is going to woo the sister-in-law of that very pony.

Surely this is the most perfect plan ever devised.

***

Proofread by ShutterflyYay.

Takes place roughly after season five (so Starlight Glimmer is running around occasionally)

For years, Twilight Sparkle and Queen Chrysalis have been at each other's throats. Both have experienced victory over the other, and both have experienced defeat. Out of all the creatures in Equestria, none despise each other the way the pony Princess and changeling Queen do. They seemed destined to remain locked in battle forever, or at least until one is finally dead at the hooves of the other. The cruel insults, the vicious loathing, and the powerful spells that have passed back and forth between them at each meeting have become the stuff of legend.

Imagine Twilight's surprise when she finds out changelings consider this dating.

And now they're married.

***

Sequel: Pony Courtship Rituals

***

Some beautiful fanart of the end of chapter three was done by Dmann892; you can see it here.

More awesome fanart, this time from chapter one.

Now with a TvTropes page (obligatory TvTropes warning goes here).

If you want a Russian translation, you can find it here.

There is now a reading of the story on Youtube, which starts here.

Before she became Nightmare Moon, Luna fought many adversaries who threatened Equestria. And since her return, new and old enemies have appeared with alarming frequency. But the land had peace for a thousand years while Luna was on the moon, and now the princess questions how such a thing could be possible.

Celestia offers her a completely logical and reasonable explanation.

Now with an audiobook by Illya Leonov.

This story is a sequel to Princess Celestia: A Brief History

  When Celestia first laid eyes on Twilight Sparkle, she knew she’d seen her somewhere before. Though she’d managed to hide this from both Sunset and Twilight, after they departed for the evening, Celestia needed to be sure.
  With her trusted aide Raven at her side and a dangerous threat on the horizon, Celestia heads to the offices of the Equestrian Secret Service to investigate her suspicions.
  Because if she’s right, the possibility of eternal night is the least of Equestria’s concerns.

In FimFiction's Feature Box from October 17 to October 21, 2016 with a Hot tag!

Featured on Equestria Daily on October 23, 2016!

Historian’s Note:
In a timeline where the Sonic Rainboom didn’t happen, The Cloudsdale Report occurs directly after the events chronicled in Princess Celestia: A Brief History, which occur the day after The Application of Unified Harmony Magics.

Cast: Princess Celestia, Raven, Philomena, Twilight Sparkle, Sunset Shimmer

Stories set in the Wavelengths Timeline in chronological order:

Origins Arc
The Alchemy of Chemistry
Bards of the Badlands
Grading on a Bell Curve
Habits of the Equestrian Phoenix
How Not To Use Your Royal Prerogative

Applications Arc
The Application of Unified Harmony Magics
Princess Celestia: A Brief History
The Cloudsdale Report

Dreamers Arc
Tactics of Snowbound Unicorns
A Study in Chaos Theory
Teahouses of Saddle Arabia
As the Raven Flies

Cover Design by Amber Spark in Pixelmator
Celestia’s Cutie Mark by BlackGryp0n (Yes, that BlackGryp0n)

Beta Reader Credits
Ebon Quill - Quest Designer on The Manehattan Project
Little Tinker - Master of Systems at Ponyville Live & Scripting Engineer on The Manehattan Project

This story is a sequel to The Application of Unified Harmony Magics

  After the incredibly awkward reunion last night, Sunset is less than eager about her promise to introduce Twilight Sparkle to Princess Celestia. Maybe it would help if Twilight could go more than five minutes without a panic-driven ramble.
  Despite her doubts, Sunset decides to do her best. But between a bowl of ice water, Philomena’s antics and Celestia’s sly smile, Sunset knows this isn’t going to be easy.
  Still, Twilight probably could have handled it better.

Featured as a Sequel on Equestria Daily on October 8, 2016!
Appeared in the FimFiction Featured Box on September 27, 2016!

Historian’s Note: Set in the Wavelengths timeline where the Sonic Rainboom didn’t happen, the events of Princess Celestia: A Brief History occur the day after the story The Applications of Unified Harmony Magics.

Cast: Sunset Shimmer, Twilight Sparkle, Princess Celestia, Minuette & Philomena

Stories set in the Wavelengths Timeline in chronological order:

Origins Arc
The Alchemy of Chemistry
Bards of the Badlands
Grading on a Bell Curve
Habits of the Equestrian Phoenix
How Not To Use Your Royal Prerogative

Applications Arc
The Application of Unified Harmony Magics
Princess Celestia: A Brief History
The Cloudsdale Report

Dreamers Arc
Tactics of Snowbound Unicorns
A Study in Chaos Theory
Teahouses of Saddle Arabia
As the Raven Flies

Cover Credits
Cover Design by Amber Spark using Pixelmator
Princess Celestia Vector by Wrathx79
Princess Celestia's Room by tamalesyatole
Sunset Shimmer Cutie Mark by MillennialDan
MLP Book Vector by SnowedEarth
MLP Magic Aura Vector by AimeeLovesU

Beta Reader Credits
Ebon Quill - Worldbuilding Writer on The Manehattan Project
Little Tinker - Master of Systems at Ponyville Live & Scripting Engineer on The Manehattan Project

Special Thanks
Fahrenheit - For wonderful advice on creating an epic and entertaining synopsis!

Deep in the Royal Library is a book. A terrible book that is said to send whoever reads it mad. A book so dangerous that it has to be hidden away and secured with chains to prevent it from ever being opened.

A book which has just been accidently checked out by Spike on behalf of Twilight Sparkle.

The Star In Yellow is rising once more, and only Rainbow Dash and Spike can save Twilight before it's too late. Ideas live forever. Ponies do not.

This fic is loosely inspired by the 19th century story 'The King In Yellow'.